Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311D07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_8388| Best HMM Match : ig (HMM E-Value=8.80001e-41) 31 0.76
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 29 1.8
SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39) 29 1.8
SB_9407| Best HMM Match : DCX (HMM E-Value=2.6) 28 5.4
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10) 27 7.1
SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15) 27 9.4
SB_54958| Best HMM Match : NUDE_C (HMM E-Value=9.8) 27 9.4
SB_38454| Best HMM Match : DCX (HMM E-Value=4.2) 27 9.4
SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/79 (24%), Positives = 31/79 (39%)
Frame = +2
Query: 101 FDLATMSLFDIFGDHLTRQAVKNVSRQPLHNIENMGKVVSAGPTKPNEPTKKGETKKSFL 280
F T+S + + D++ A R+P H I + + PT+ KK K
Sbjct: 438 FPAGTVSRWRVIADYVNDHAKTGNKREPKHVIVKVKSLKKIDPTQIENVNKKAFAKFDLS 497
Query: 281 SNTGKAIQSTPSRKVFTPR 337
GKA + + + PR
Sbjct: 498 HTQGKASEESVPTVRYEPR 516
>SB_8388| Best HMM Match : ig (HMM E-Value=8.80001e-41)
Length = 666
Score = 30.7 bits (66), Expect = 0.76
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 264 PRNLFY-QILGKQFRAHHHVKCSPLVL 341
PR LFY +++G+ R H +CSP +
Sbjct: 257 PRGLFYIRVIGRDLRGHEFYRCSPTAI 283
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 65 DDIEKISLSKLTFDLATMSLFDIFGDHLTRQAVKNVSRQ-PLHNIENM 205
D+I K+ L TF A LFD G H A ++RQ P+H +E +
Sbjct: 207 DEIGKMELFSQTFSRAIQDLFD--GGHSPILATVPIARQKPIHLVEQL 252
>SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39)
Length = 340
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 347 VGSLIYTDEDGDKGCTFEEIEFTKPKHYDN 436
V L Y D KG +E ++FTK HY N
Sbjct: 253 VNVLFYYDPKRGKGVPYELVQFTKLLHYSN 282
>SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)
Length = 306
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 311 PSRKVFTPRAVNVGSLIYTDEDGDK 385
PSR++ + AV VGS++Y D DK
Sbjct: 75 PSRRLTSEPAVRVGSIVYLSCDKDK 99
>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
Length = 507
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 74 EKISLSKLTFDLATMSLFDIFGDHLTRQAV 163
EK+ SK LA L +F D+ T QAV
Sbjct: 69 EKVQASKCNMHLAVPLLIGLFADYATMQAV 98
>SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15)
Length = 169
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 218 SAGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSRK 322
S T PN+ TK GET K+ T K ++ +K
Sbjct: 107 SVKKTAPNDKTKAGETPKAAGKKTAKPAKAKRGKK 141
>SB_54958| Best HMM Match : NUDE_C (HMM E-Value=9.8)
Length = 267
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 362 YTDEDGDKGCTFEEIEFTKPKHYDNYQRDLFDFIPLSEPCHLKQLSPPSTPPP 520
Y D+D D+ + + KP+ Q + DF LS+P H + P TPPP
Sbjct: 204 YDDDDDDE----DNMVVVKPRG----QVEHIDF-GLSKPMHYSNVRPRGTPPP 247
>SB_38454| Best HMM Match : DCX (HMM E-Value=4.2)
Length = 239
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 194 IENMGKVVSAGPTKPNEPTKKGETKKSFLSNTGKAIQSTPSRK 322
+ N K V+AGP K PTK K+ T + + RK
Sbjct: 45 LNNSAKYVAAGPEKSRVPTKTHFKAKNLSKTTPNRTKPSHGRK 87
>SB_1495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 260 ETKKSFLSNTGKAIQSTPSRKVFTPRAVNVGSLIYTDEDGDKGCTFE 400
E +K+ + G+A T R V TP +V V ++ +DE D T E
Sbjct: 160 EARKAIRKSWGRA--DTSKRNVTTPESVRVIFVVGSDEKSDSRVTKE 204
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 LFDIFGDHLTRQA-VKNVSRQPLHNIENMGKVVSAGPTKPNEPTK 253
++++F L R A +K V + P + + G++VSA P PTK
Sbjct: 78 IWEVFNGTLPRPASLKTVGKIPKSLLVHYGELVSANPRIRPNPTK 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,548
Number of Sequences: 59808
Number of extensions: 303413
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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