Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                27   7.1  
SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_38268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 403  WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIV 519
            WGE  FL IQT+++  L  H+   PM   +F  +Y   V
Sbjct: 928  WGESFFLCIQTSLLIILYFHFNRKPMIAALFCGLYAVSV 966


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 313  GINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLH 462
            G+  Y +YL++  + A +   +++     AWG    +   TA +AA++++
Sbjct: 1533 GVEGYNLYLQIVQVMATYRRRFMLKAVVFAWGVPAVIVAITATVAAVLVN 1582


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 239 SASF*GPYW*KCHKFSKFYKVRVPKESIFME 331
           S  + G +W + HK    YKV+  KE I +E
Sbjct: 71  SVLYRGNFWLELHKIRHAYKVKKNKEGIVLE 101


>SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 305 LLLCKILKICGTFTSMDPRMMPIPRPLLSVDLKHGTSRKL 186
           L+L K LKI       D   +P+P  LL +D   GT+ ++
Sbjct: 344 LILTKDLKIKKVDVYTDANSIPLPTHLLRIDQDDGTTLRI 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,118
Number of Sequences: 59808
Number of extensions: 330924
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)