Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311D03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 31 0.56
04_03_0096 + 11158108-11159083,11159116-11159744 29 1.7
01_03_0018 - 11686420-11687460 29 3.0
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 28 4.0
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220... 27 9.1
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 27 9.1
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 27 9.1
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 27 9.1
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 31.1 bits (67), Expect = 0.56
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +3
Query: 123 SSLSTNTTMFLLYFLIVVALVSADVHDKELKIEENP-RVYCGRH-LANARMILCYDTVEK 296
+S S++ +FLL ++ L A+VH E ++E P + C H + L T+E
Sbjct: 2 ASSSSSRLLFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEV 61
Query: 297 RAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVDECCLKPCYTY 464
R + N+++ + ++ + R F GP V +C +KP +Y
Sbjct: 62 REGDTVVINVVNHAQYN----VTIHWHGIRQFRTGWAD--GPEFVTQCPIKPGGSY 111
>04_03_0096 + 11158108-11159083,11159116-11159744
Length = 534
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 216 IEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISSGDLS 347
++ P V+ GRH R + ++ SY D N++ S DLS
Sbjct: 168 VDSEPPVFPGRHYELPRSLYSCVALQTLCLSYCDLNLLESIDLS 211
>01_03_0018 - 11686420-11687460
Length = 346
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +3
Query: 285 TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLV 431
T+E + +A G + WP S TR + E RG GLV
Sbjct: 291 TIELMEEPMRNAEFFRRGVVGGWPNYLSPEMATRIDEITESKFRGSGLV 339
>01_03_0271 +
14454681-14456949,14457222-14457476,14458800-14458864,
14459053-14459171,14459270-14459324
Length = 920
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 192 DVHDKE--LKIEENPRVYCGRHLANARMILCYDT 287
+VHD + LK+ N RV+CG H+ +DT
Sbjct: 814 EVHDPQIPLKLAPNQRVFCGLHMEIVLEAYMFDT 847
>08_01_0272 +
2200061-2200078,2200835-2202076,2202201-2202698,
2203316-2203345
Length = 595
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = +3
Query: 144 TMFLLYFLIVVALVSA-DVHDKELKIEENPRVYCGRHLANARMILCYDTVEKRAQSYLDA 320
T+++ + + + L+S + + + + + RVY LA ++ + YD + Y +
Sbjct: 206 TLYMAFLMDMTPLISRPETYSLKGLLSKEHRVYVSYKLAELQLSIVYDYFYTKLGVYFEP 265
Query: 321 NIISSGDLSSWPGLSSQYAKTRAFALAEKS-KRGPGLVDECCLKPCYTYDLLNYCWNNSV 497
+G + L S +A FA S R +V L + ++L SV
Sbjct: 266 EERLNGRFAQLATLGSTFAALFLFARGNFSYDRADIVVSYILLSGAFILEIL------SV 319
Query: 498 CLTVTYYW 521
+ V+ +W
Sbjct: 320 FIVVSSFW 327
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 380 LGVLGRQARPGAQISRRNNVCVEIRLGSLLDSV 282
LG + RQA GA +S + + VE L LDSV
Sbjct: 756 LGEMYRQADTGAIVSLLSRIAVENSLSDKLDSV 788
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 296 ESPILSRRKHYFVGR-FE-LLAWPVFPVRQDSRFCSRRKI*TRPWLSRRML 442
+S + +RR H + + E L W +F DS+FC R+ T P + ++ L
Sbjct: 267 KSHLQNRRNHLILPKALEWTLNWCIFQSMFDSKFCVRKDFLTSPAVLKKRL 317
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 474 NYCWNNSVCLTVTYYW 521
NYC + S+C T+T++W
Sbjct: 1481 NYCSDISLCSTLTFFW 1496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,368
Number of Sequences: 37544
Number of extensions: 271281
Number of successful extensions: 679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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