Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)               31   0.76 
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   5.4  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     27   7.1  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      27   9.4  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)
          Length = 122

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 240 CGRHLANARMILCYD---TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKS 410
           CG  +++A  I+CY    T  +R  +  D +I+ S D +      +Q  K  +       
Sbjct: 48  CGDQISDAWTIICYGGGVTARQRQINRRDLSIVQSADEARQFNSKTQRGKRSSIYT---- 103

Query: 411 KRGPGLVDECCLKPCYTYDLLNYC 482
                + +ECC++ C   ++  YC
Sbjct: 104 -----ITEECCVEGCKQEEIREYC 122


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 156 LYFLIVVALVSADVHDKELKIEENPRVYCGR 248
           L F+IV       V  KE+++E+ P  YCGR
Sbjct: 7   LLFIIVTLSAVHQVLGKEVELEKCPGQYCGR 37


>SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +3

Query: 429 VDECC----LKPCYTYDLLNYC 482
           +D CC    L PCYTY LL+ C
Sbjct: 162 LDSCCTYRFLDPCYTYRLLDPC 183


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 258 WPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTA 154
           W N    RP     FS+L + ++ +P PQ   +TA
Sbjct: 51  WRNASERRPSGRGFFSSLFKKKKQAPTPQTQASTA 85


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 210 LKIEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISSGDLS 347
           L  E  P V C R +   RM LC  T    + SY    +I S DLS
Sbjct: 757 LSNENEPYVVCHRFICQCRMSLCCVTTCHMSVSY----VIVSSDLS 798


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 290 DSVIAEYHACVGQMTSAIDPRIFLNFQLFVVDVSTHQRHNDQEIQQKHRGIR 135
           + V +    C  Q+     P    N  LF + +   Q+ ND+EIQ   +G R
Sbjct: 287 EMVFSSLSECATQVPERCSPGELPNETLFRLLIEEMQQLNDREIQLSEQGCR 338


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 220 RKILGSIADVIWPTHA*YSAMTLSRREPNLISTQTLFRREI*APGLACLPSTPRLALLLS 399
           R+I   +  + W     Y    LS           LFR E+   G +  P  PRL  L +
Sbjct: 332 REIRAKLFRLFWLRTIAYHPEFLSSASHTNTQGIILFRAELSILGASYFPYLPRLQRLTT 391

Query: 400 PKNL 411
           P NL
Sbjct: 392 PNNL 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,117
Number of Sequences: 59808
Number of extensions: 314272
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)