Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    28   4.4  
At1g44760.1 68414.m05128 universal stress protein (USP) family p...    27   5.8  
At1g14780.1 68414.m01767 expressed protein                             27   5.8  
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    27   7.7  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   7.7  
At3g10440.1 68416.m01252 hypothetical protein                          27   7.7  
At1g31720.1 68414.m03892 expressed protein                             27   7.7  

>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -3

Query: 309 KIGLSSRQCHSRVSCVRWPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETS 145
           KI L      S V   +WP     R   FP+      G+ HS  P R     E S
Sbjct: 264 KIHLKVNDPGSNVLPAQWPESESARRNSFPEQRRRPAGKSHSFGPSRFRGNLEDS 318


>At1g44760.1 68414.m05128 universal stress protein (USP) family
           protein contains Pfam profile PF00582: universal stress
           protein family
          Length = 213

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 366 SQYAKTRAFALAEKSKRGPGLVDECCLKPCYTYDLLNYCWNNSVCLTV 509
           SQ  K     L    K+   L+  C   P  + +L+N C N + CLT+
Sbjct: 141 SQVKKLEVSVLVLGQKKSAPLIS-CLCGPSRSEELVNRCINGADCLTI 187


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 255 PNDVRNRPEDFPQFSTLCRGRQHSP 181
           P    N+   F   S LCRG QHSP
Sbjct: 568 PVPANNKIVKFVDLSQLCRGPQHSP 592


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 285 TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRG 419
           TV  +A+ Y D N+I   D   +  L+ Q+ +   + +  K  RG
Sbjct: 69  TVMSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRG 113


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 344  QISRRNNVCVEIRLGSLLDSVIAE----YHACVGQMTSA 240
            ++S  +NV V    GS +D++I+     Y+ACVG+ T A
Sbjct: 901  KVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHA 939


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 252 NDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAET 148
           ND  N   D  Q    C GRQ S +  R  +  ET
Sbjct: 235 NDAENHINDNVQSKRYCAGRQSSSSKTREASQTET 269


>At1g31720.1 68414.m03892 expressed protein
          Length = 194

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 261 ARMILCYDTVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFAL 398
           A   LC     ++A++ L A +   G    W G S    + RAF L
Sbjct: 28  AAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGL 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,754
Number of Sequences: 28952
Number of extensions: 214918
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)