Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D01f
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   5.8  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.6  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -2

Query: 440 RRRNLAEETVPRNSNRLMSRVTLALTRRYTNLVL--TSGQCIRLYELWVQTNLVYYVTNR 267
           ++ NL ++ +  N    +      +   Y+N     T G C+++Y  WV    +  + N 
Sbjct: 171 QKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNE 230

Query: 266 LCSN-IYKYI-IKL*RC 222
            C N +Y ++ I+  RC
Sbjct: 231 PCMNLLYSFLQIEELRC 247


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 152 FVLSLNASVVSKYGHCISNN 211
           +   +N S+ +KY +CI+NN
Sbjct: 15  YARQVNPSLFAKYSYCIANN 34


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 57  QLWPSAGAAWPSVQPLECENENFELNPQNTTSLY*V*MPVWSLNMAIAS 203
           +L P A    P +Q  E  N   +L+PQ    +  V   V SLNM + S
Sbjct: 383 ELSPQATLNSP-IQSAEAGNVELKLHPQTPDRIVKVERKVHSLNMTLRS 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,016
Number of Sequences: 5004
Number of extensions: 34306
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)