Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D01f
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604...    27   7.5  

>04_03_0888 -
           20559435-20559565,20559674-20559740,20560217-20560477,
           20560783-20560848,20560971-20561019,20561441-20561491,
           20561568-20561620,20561743-20561794,20561867-20561955,
           20562044-20562135,20562298-20562351,20563411-20563462,
           20563775-20563963
          Length = 401

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 404 NSNRLMSRVTLALTRRYTNLVLTSGQCIRLYELWVQTNLVYYVTNRL 264
           NS  L++R  + L ++  + +L      ++ ++WV+   +Y +TN L
Sbjct: 96  NSLGLLTRKFINLLKQTQDGILDLNDAAKILDVWVRKRRIYDITNVL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,675
Number of Sequences: 37544
Number of extensions: 211700
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)