Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D01f
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)                       29   2.5  
SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)                    27   7.7  

>SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 1150

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 93  VQPLECENENFELNPQNTTS 152
           VQPLEC++EN E N    TS
Sbjct: 871 VQPLECQDENLEKNAPPITS 890


>SB_51001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   FICYILYENNHFSVLFGFQLWPSAGAAWPSV 95
           F+C  L  N  F V     +WP+  A W S+
Sbjct: 158 FVCLFL-SNVQFQVYLAAGMWPTTSAKWQSL 187


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +3

Query: 18   LYENNHFSVLFGF-----QLWPSAGAAWPSVQPLECENENFELNPQNTTSL 155
            L+ N+H     GF      +W  +G A   V+P    NEN  ++P  TT L
Sbjct: 1585 LWGNSHPGAATGFPSQVPSMWSFSGGAPRDVEPQSGTNENGLVSPSMTTFL 1635


>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
          Length = 1033

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 319 RMHCPLVSTKFVYRRVSASVTRD 387
           R+HCP  S    YR ++ S+ RD
Sbjct: 185 RLHCPKTSYGATYRWINGSIDRD 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,428
Number of Sequences: 59808
Number of extensions: 250677
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)