Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D01f
         (468 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse t...    23   4.0  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   5.3  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    22   9.3  

>AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 129

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 344 VLTSGQCIRLYELWVQTNLVYY 279
           + T   C ++YE+ +Q +L+Y+
Sbjct: 5   ITTLPSCAKVYEIVIQNSLMYH 26


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 189 YLETTLAFKLSTNLWYFV 136
           Y   +L+FKL  N+ YFV
Sbjct: 209 YQRLSLSFKLQRNIGYFV 226


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 174 VWSLNMAIASVITNNVASL*FNYVFI 251
           VW + M +  VI   +  L FN++ +
Sbjct: 485 VWMIKMMVTVVIVFTICWLPFNFLMV 510


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,777
Number of Sequences: 2352
Number of extensions: 9478
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40820256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)