Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D01f
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    29   2.2  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    27   8.9  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    27   8.9  

>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/65 (27%), Positives = 36/65 (55%)
 Frame = -2

Query: 431 NLAEETVPRNSNRLMSRVTLALTRRYTNLVLTSGQCIRLYELWVQTNLVYYVTNRLCSNI 252
           N AE++V  + +R  ++   A  R+Y +  L   Q I+ ++   Q+   +Y+T  +CSN+
Sbjct: 76  NAAEDSVSTSESRKRAKARTAHNRQYLHREL---QPIKRFQQKKQSAF-FYLTVLVCSNV 131

Query: 251 YKYII 237
           ++  I
Sbjct: 132 FEQFI 136


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 91  PCNLWNVKMK--ISSSTHKIPQVCTKFKCQC 177
           PC ++N   +  +   TH+I ++   FKC+C
Sbjct: 570 PCQVFNKNHRECLEKHTHQIGEIHGSFKCRC 600


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 91  PCNLWNVKMK--ISSSTHKIPQVCTKFKCQC 177
           PC ++N   +  +   TH+I ++   FKC+C
Sbjct: 570 PCQVFNKNHRECLEKHTHQIGEIHGSFKCRC 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,980
Number of Sequences: 27780
Number of extensions: 197405
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)