Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311D01f
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 189 YLETTLAFKLSTNLWYFV 136
           Y   +L+FKL  N+ YFV
Sbjct: 228 YQRLSLSFKLQRNIGYFV 245


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = +1

Query: 61  SGRARGPRGPPCNLWNVKM-KISSSTHKIPQVC 156
           +G  +GPR   C  WN  + K+       P  C
Sbjct: 563 TGLGKGPRTTYCAFWNEFLPKLKGIPDPXPNTC 595


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 155 VLSLNASVVSKYGHCISNNQ 214
           +L  N   + +  HC++NNQ
Sbjct: 400 ILGANVKELIRNTHCVNNNQ 419


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 101 RLHGGPRGPRARPELETK 48
           R+HG P    A P+L T+
Sbjct: 443 RIHGSPATTAAPPQLPTE 460


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 13  IFYTKIIISVFYLVSSSGRARGPRGPPCNLWNVK 114
           ++Y  I+    +    S R+  P G   N WN K
Sbjct: 75  VYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTK 108


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 320 RLYELWVQTNLVYYVTNR 267
           +L E WV ++ ++Y T++
Sbjct: 191 KLVEKWVNSSEIFYTTSQ 208


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 63  WPSAGAAWPSVQPL 104
           W S  ++WP++ PL
Sbjct: 433 WYSLASSWPALVPL 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,349
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)