Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.026
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    29   0.42 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   5.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.8  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 33   PREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPHREA 161
            P  G    P+P  +A PVP+    A PS    R ++PSPH  A
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEA-PSVSTPRSSVPSPHSNA 1263



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 3   PRPRREASSVPREGTSAR--PLPRREAHPVPSRKGRAVPS 116
           P+     S+ P E ++A+  P P+ E  P+PS   +  P+
Sbjct: 480 PKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPA 519


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +2

Query: 2   TPSTSRSQFRTP*RYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 163
           +PS     FR P     PP   SRS S +  +   RSQL   S     STS ST
Sbjct: 300 SPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLS-AENDSTSNST 352


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +3

Query: 3   PRPRREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 149
           P  R  ++S  +      P   R AHP+  ++        P  Q  PSP
Sbjct: 349 PSTRHVSNSTNKSSLHPSPTSLRVAHPIIPQRASPASQSFPSLQDTPSP 397


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 102  GLFYWVRDVLLDGVRGGHWYL 40
            G F W    LL  V  GHW++
Sbjct: 2012 GRFEWFDGYLLKAVEEGHWFV 2032



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 99  LFYWVRDVLLDGVRGGHWYL 40
           +F +V   L+  VR GHW L
Sbjct: 624 MFSFVEGALVKAVRSGHWVL 643


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  PPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 154
           P  TP+ S + T       S LTS STG T  T+
Sbjct: 264 PRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTT 297


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 63  PRREAHPVPSRKGRAVPS*HPRRQAIPSPHREARACSH 176
           PR E    P +KG  +    P+    P+    AR C H
Sbjct: 152 PRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKH 189


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 76   HIPYPVEKAVPFPVNIPVDRPYPVH 150
            H  +    + PFP+    D PY +H
Sbjct: 1788 HFGFTKVISTPFPIEFKCDAPYRIH 1812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,932
Number of Sequences: 5004
Number of extensions: 25538
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)