Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311C11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 34 0.067
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 30 1.1
At5g18960.1 68418.m02252 far-red impaired responsive protein, pu... 29 1.4
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 29 1.4
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 29 1.4
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 29 1.9
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 2.5
At2g36695.1 68415.m04502 expressed protein 28 3.3
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 4.4
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 4.4
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 28 4.4
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 27 5.8
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 27 5.8
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 7.7
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 7.7
At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase... 27 7.7
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/56 (37%), Positives = 23/56 (41%)
Frame = +3
Query: 6 RPRREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPHREARACS 173
R RR S R S P RR P P + R PS RR P P R R+ S
Sbjct: 318 RRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPARRRRSPS 373
Score = 32.7 bits (71), Expect = 0.15
Identities = 23/73 (31%), Positives = 28/73 (38%)
Frame = +3
Query: 12 RREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPHREARACSH*EART 191
RR++ + R S P RR P P + R PS RR P+P R AR
Sbjct: 300 RRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARR 359
Query: 192 VPS*GTGTNRRQP 230
S RR P
Sbjct: 360 HRSPPPARRRRSP 372
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 3 PRPRREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP-HREARACS 173
P +R + S P + P RR P P + R PS RR+ PSP +R R+ S
Sbjct: 346 PARQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPS 403
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 3 PRPRREASSVP-REGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP-HREARACS 173
P RR S P R S P RR P P + R PS RR PSP +R R+ S
Sbjct: 355 PPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRS 413
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 57 PLPRREAHPVPSRKGRAVPS*HPRRQAIPSPHR--EARACSH*EA 185
P PRR P P R +PS PRR +PSP R + A +H E+
Sbjct: 463 PPPRRAGLPSPPPAQR-LPSPPPRRAGLPSPMRIGGSHAANHLES 506
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 6 RPRREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 149
R RR S R S P RR P P + P+ R++ PSP
Sbjct: 308 RRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSP 355
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 54 RPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPH 152
+P+P + PVPS K + VPS ++PSP+
Sbjct: 37 KPVPSPKPKPVPSPKPKPVPSPSVPSPSVPSPN 69
>At5g18960.1 68418.m02252 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 788
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 39 EGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPHREARAC 170
EG+ PR P P++ G V P+ + + RE R+C
Sbjct: 134 EGSVEETTPRPSRAPAPTKLGVTVNPHRPKMKVVDESDRETRSC 177
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -1
Query: 170 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 81
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -1
Query: 170 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 81
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 9 PRREASSVPREGTSARPLPRREAHPVPSRKG 101
PR+ S P + S P+PR+ P P +G
Sbjct: 222 PRKNRSYTPEQARSQSPVPRQSRSPTPVPRG 252
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 53 PPLTPSRSTSRTQ*KRPCRSQLTSP 127
PPL PS+S T+ + P SQ +SP
Sbjct: 203 PPLLPSKSIDETRLRSPLMSQASSP 227
>At2g36695.1 68415.m04502 expressed protein
Length = 117
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 36 REGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAI-PSP 149
REG P R+ P P R+ PS P R+ + PSP
Sbjct: 75 REGVPPSPPRRKGVAPSPPRRKGVAPSPSPMRKGVAPSP 113
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 8 STSRSQFRTP*RYQCPPLTPSRSTSRTQ*KRPCRSQLTSPST 133
S SR + R+ R P++PSRS R++ + RS++ +P T
Sbjct: 31 SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGT 72
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 14 SRSQFRTP*RYQCPPLTPSRSTS-RTQ*KRPCRSQLTSPSTGHTQSTSRS 160
S+S+ RTP RY+ P RS S R + P R + SP +S SRS
Sbjct: 125 SKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 174
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 8 STSRSQFRTP*RYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 160
S S++Q ++ + Q + S+S S++Q + +SQ SPS TQS S++
Sbjct: 772 SPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQT 822
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 8 STSRSQFRTP*RYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLFTLRSP 187
S+ RS R+P Q + SRS +R + RS + SP ++S RS+ RSP
Sbjct: 530 SSRRSLSRSP--IQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSP 587
Query: 188 YRTQLR 205
R+ R
Sbjct: 588 VRSSRR 593
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 82 PYPVEKAVPFPVNIPVDRP-YPVHIEKHVPVHIEK 183
P+P PFP P++ P YP + +P H+ +
Sbjct: 96 PWPAPSPSPFPNGGPIESPAYPPAPPRPIPPHLRR 130
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 68 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLFTLRSP 187
SRS SR+ + RS+ S S G +S SRS L +SP
Sbjct: 201 SRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/54 (24%), Positives = 21/54 (38%)
Frame = +3
Query: 3 PRPRREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPHREAR 164
P+P+ P+ S +P P ++ P P P P +Q P P +
Sbjct: 534 PKPQPPKQETPKPEESPKPQPPKQETPKPEES----PKPQPPKQETPKPEESPK 583
>At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 (GI:5669846),
PG2 (GI:5669848) from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 540
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 6 RPRREASSVPREGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSPH 152
+P+ ++ ++P P+ + P S G V S P+ Q P PH
Sbjct: 56 KPKSHENNHHHMSHKSKPKPKMKTQPPKSNDGSPVVSQPPQVQQPPPPH 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,526,497
Number of Sequences: 28952
Number of extensions: 143251
Number of successful extensions: 545
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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