Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 394  NSNNVYPASAISRPLSAALGDSLKTRLWTYHAGNDIKLSAI 516
            N     PASAISR  S     +   + W YH     K++ I
Sbjct: 2595 NQEEGSPASAISRNHSTRSSLNSPRQFWAYHGSRSKKIADI 2635


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 284 HNADSNTQKGMDNPVPRFEKNLEEFFSICDQMELHLRTATTCIQQAQSAAHYLPLSVIAS 463
           +N  S     M   +P  E+N E+F S  D ME+H  +    I  +    ++ P S ++S
Sbjct: 305 NNNKSGDSLEMSTTIPSDEEN-EDFTSKVDAMEIHSGSLPLNIDSSPIFTNHSPSSSLSS 363


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 332 RFEKNLEEFFSICDQMELHLRTATTCIQ 415
           +FE+ +EE+  + +++ L  RT+  C++
Sbjct: 24  KFEQKVEEYLEVLNELHLTGRTSGFCMR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,415
Number of Sequences: 5004
Number of extensions: 37550
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)