Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0309 + 14128994-14129312,14129937-14130064,14130220-141304...    31   0.74 
11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976     28   4.0  
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243...    27   6.9  
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581...    27   6.9  

>06_02_0309 +
           14128994-14129312,14129937-14130064,14130220-14130453,
           14131323-14131575,14133281-14133468
          Length = 373

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/93 (19%), Positives = 39/93 (41%)
 Frame = +2

Query: 197 ISKVKSLMGSLRESIPMTLKSAAQILHQNHNADSNTQKGMDNPVPRFEKNLEEFFSICDQ 376
           + +V +  GS+R  +P T+     +L +        ++G  +     +  ++E       
Sbjct: 62  LRRVTTSSGSMRLLLPFTITDTPTLLLRRSRLHQALRRGSPSSFKASKLGIKELLPAYKD 121

Query: 377 MELHLRTATTCIQQAQSAAHYLPLSVIASRLDS 475
            +L L    T +  A   + Y PL+ I++ + S
Sbjct: 122 QDLELNDLLTGVAFASGGSGYDPLTSISTAISS 154


>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
          Length = 211

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = -1

Query: 197 YCPFYLVVFVEALVQVAFVEEIAVALWVLVQAFAWLH-------LELQQLGSLVRAYSFD 39
           Y P +    ++  +  A+   I+V   + V AFA+LH       +E  QLG L+ A  FD
Sbjct: 68  YLPRHQFGSLQGKMFPAYFMLISVCSAISVAAFAYLHPWKTASTIERYQLGFLISALGFD 127

Query: 38  CDSYLKF 18
             + L F
Sbjct: 128 LSNLLVF 134


>11_06_0655 -
           25923171-25923185,25923208-25923432,25923865-25924324,
           25924330-25924985
          Length = 451

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 236 SIPMTLKSAAQILHQNHNADSNTQKGMDNPVPRFEKNLEEFFSICDQM-ELHLRTATT 406
           S+P ++ SAA +     N     +  MD  V   +K +++  +  D+M E H  T +T
Sbjct: 164 SVP-SITSAAMVTSVPFNETKKAETDMDKVVENLDKTIQDLCTKIDRMLERHFATPST 220


>08_02_0531 +
           18256597-18256836,18257637-18257735,18258038-18258184,
           18258295-18258427,18258521-18258585,18258792-18258962,
           18259095-18259199,18259495-18259602,18259792-18260088,
           18260191-18260256,18260477-18260679,18261178-18261232,
           18261318-18261503,18261701-18261985
          Length = 719

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = +2

Query: 188 MDNISKVKSLMGSLRESI-------PMTLKSAAQILHQNHNADSNTQKGMDNPVPRFEKN 346
           + ++ KVK  M SL++S+          ++  A++     + D   Q+ MD       K 
Sbjct: 315 ISDVEKVKEEMASLKKSLHDASYERDKAVQDLARLKQHLLDKDLEDQEKMDED----SKL 370

Query: 347 LEEFFSICDQMELHL 391
           +EE  +ICDQ   H+
Sbjct: 371 IEELRAICDQQRAHI 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,306
Number of Sequences: 37544
Number of extensions: 227340
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)