Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.1  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_52193| Best HMM Match : rve (HMM E-Value=5.8e-20)                   28   5.4  
SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)                27   7.1  
SB_12770| Best HMM Match : MH1 (HMM E-Value=0)                         27   7.1  
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)                  27   9.4  
SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 230  VRIPLKTSL*IYCPFYLVVFVEALVQVAFVEEIAVALWVLVQAFAWL 90
            V++  + +L ++    + V+V  +V VA    + VA+WV V    W+
Sbjct: 1773 VKVEWEATLVVWVAVMVAVWVAVMVAVAVWVAVWVAVWVAVMVAVWV 1819


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 209 KSLMGSLRESIPMTLKSAAQILHQNHNADSNTQKGMDNPVPRFEKNLEE 355
           K+L+    +     + + A++LH +HN  + +    ++  P   K LEE
Sbjct: 344 KALIAGYGKGTDAAVCTTAELLHNSHNVSTTSSPRPEDSDPEVTKELEE 392


>SB_52193| Best HMM Match : rve (HMM E-Value=5.8e-20)
          Length = 353

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
 Frame = +2

Query: 215 LMGSLRESIPM-TLKSAAQILHQNHNADSNTQKGMDNPV--PRFEKNLEEFFSICDQMEL 385
           L GS RE IP+ + K   + LH  H      +      V  P+ ++ +EE   +C  +++
Sbjct: 64  LWGS-REVIPLASRKKMLEELHWEHPGMFGMKAIARTCVWWPKMDEQIEEACRVCSWIDV 122

Query: 386 HLRTATTCIQQAQS-----AAHYLPLSVIASRLDSGP 481
              T+TT ++         A H LP  V++   D+GP
Sbjct: 123 QHMTSTTALRTIDELRLIFANHGLPEEVVS---DNGP 156


>SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)
          Length = 1133

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 275 HQNHNADSNTQKGMDNPVPRFEKNLEEFFSICDQMELHLRTATTCI 412
           HQ+  ADS +++ +++ V + +K   E  S+   +    RTA+ C+
Sbjct: 83  HQSVEADSFSRRAIESLVKKLKKKFYELDSLIIAITSKGRTASKCV 128


>SB_12770| Best HMM Match : MH1 (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 275 HQNHNADSNTQKGMDNPVPRFEKNLEEFFSICDQMELHLRTATTCI 412
           HQ+  ADS +++ +++ V + +K   E  S+   +    RTA+ C+
Sbjct: 263 HQSVEADSFSRRAIESLVKKLKKKFYELDSLIIAITSKGRTASKCV 308


>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
          Length = 766

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 373 SNGTTFANSNNVYPASAISRPLSAALGDSLKTRL 474
           SNGT  + S   +PA+    PLS A+  S  T +
Sbjct: 189 SNGTMSSTSTQAFPAALNETPLSGAVQTSENTSI 222


>SB_7900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 228 YANLYR*HLSLQPKYYTKITMQTPIHKKVWIILFLDLKKT*KSFSQSVIKWNYICEQQQR 407
           +AN Y   ++    YY  +      HKK  I L   LK   K +S S+ K   I ++   
Sbjct: 19  HANRYGKFINQSRPYYEALERSKKAHKKEVISLQGKLKVAKKDYSMSLRKLEGISDEIHE 78

Query: 408 VSSKR 422
           V   R
Sbjct: 79  VRQSR 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,180
Number of Sequences: 59808
Number of extensions: 268735
Number of successful extensions: 723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)