Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C07f
         (404 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   2.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   2.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   4.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 229 KGQMERHRQLKRPPVRHKRQGQQRMQLIRC*CDGST 122
           K   E+  ++K+        G    +++RC C GST
Sbjct: 891 KATCEKLFRMKKSSALRPASGGTTARVVRCVCAGST 926


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 111 CGYHCRCRHQ 82
           CG +C C HQ
Sbjct: 562 CGQNCMCTHQ 571


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 328 TRYSGCHLNRILRSGIKRQHSRQGQRDRGPKL 233
           T    C L + L  G+ +  SR G+R    K+
Sbjct: 56  TACKACRLRKCLLVGMSKSGSRYGRRSNWFKI 87


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +1

Query: 268 YVAV*YQTAKSCLSDNLNTSCRIRHEGEVW 357
           YV     T  SC  DNL     + +   +W
Sbjct: 238 YVVATLGTTSSCTFDNLEELGPVCNSNNIW 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,041
Number of Sequences: 336
Number of extensions: 1535
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)