Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C07f
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    34   0.010
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    34   0.010
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    26   2.6  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   3.4  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   3.4  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   5.9  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   5.9  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    25   5.9  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +1

Query: 334 IRHEGEVWRVKYTLARIRKAARE 402
           +R++ E+WRV  TL++IR+AARE
Sbjct: 36  LRNKHEIWRVALTLSKIRRAARE 58


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +1

Query: 334 IRHEGEVWRVKYTLARIRKAARE 402
           +R++ E+WRV  TL++IR+AARE
Sbjct: 36  LRNKHEIWRVALTLSKIRRAARE 58


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 292 AKSCLSDNLNTSCRIRHEGEVWRVK 366
           A   L DNL  +C  + EGEV  VK
Sbjct: 166 ASEVLKDNLLQTCNSKREGEVCDVK 190


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -2

Query: 277 RQHSRQGQRDRGPKLPKGQMERHR-----QLKRPPVRHKRQGQQRMQ 152
           R++    +RD  P   + + ERHR     +  R PV H+R  Q  ++
Sbjct: 47  RRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNWQPELK 93


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 378 SERVFDAPYFTLVPNSARGIQVVT*TGFC 292
           +E +F  PYF L+ ++ RG  V+T    C
Sbjct: 176 AEALFQKPYFQLLSDALRGGGVITTQAEC 204


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 80  HWWRHLQW 103
           +WWRHL W
Sbjct: 57  NWWRHLNW 64


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 3   QNDENYLSHLCAGRHRRGQADTFKRTIGGGTCSGNRNKLSVLPSHQQRISCI 158
           ++DE Y   L      RG+ +T K+     + +  RNK +   S +Q  +C+
Sbjct: 316 KDDEQYAKRLAKEEEERGKKETPKK----ASNTPRRNKSNTQKSRKQSENCL 363


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -3

Query: 393 SLTDTSERVFDAPYF--TLVPNSARGIQVV 310
           SL DT+ERV   PY+  T+VP+  +G +V+
Sbjct: 132 SLKDTAERVL--PYYKSTIVPHILKGEKVL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,613
Number of Sequences: 5004
Number of extensions: 22926
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)