Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C07f
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.001
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   1.4  
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)                      29   1.4  
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)                 29   1.9  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   2.5  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.5  
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_52567| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.7  
SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               27   7.7  
SB_47096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +1

Query: 334 IRHEGEVWRVKYTLARIRKAARE 402
           +R++ EVWRVK TLA+IRKAARE
Sbjct: 34  LRNKREVWRVKLTLAKIRKAARE 56


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 307  LNRILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQQRMQLIR 143
            L + +R  ++R+  R G+R R  +  +    + R+  R   RHKR  Q+R++  R
Sbjct: 1163 LRQFVRRAVRRRVRRVGRRFRRKRRRRLIRRKTRRFARRVQRHKRNLQKRLRRAR 1217


>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 697

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 343 RAEFGTRYSGCHLNRILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQ 164
           R +   R    HL +  +   +R    Q Q+ +  +  + ++++ RQL+    RH +Q Q
Sbjct: 220 REKAAQRQQQQHLQQHRQQQQQRLDRHQQQQGQQQQQQQQRLQQRRQLRERQQRHLQQQQ 279

Query: 163 QRMQ 152
           QR Q
Sbjct: 280 QRQQ 283


>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
          Length = 654

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 108 RNKLSVLPSHQQRISCIRCC-----PCRL-CRTGGRFSCLCRS 218
           RNK S L +  + +SC+RCC     PC L C       CL +S
Sbjct: 86  RNKQSTLETKSRILSCVRCCGILLGPCTLPCGHTVCEKCLSKS 128


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 96  CSGNRNKLSVLPSHQQRISCIRCCPCRLCR--TGGRFSCLCRSICPF 230
           C+     LS+L S  QR  C+R CP R  R    G F C  R    F
Sbjct: 397 CTRCNPPLSLL-STGQRAQCVRTCPFRFSRMNVNGSFVCQWRGSLEF 442


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKR 173
           K ++  +G R RGP+ P G          PP RH R
Sbjct: 446 KLEYPVKGGRGRGPRTPPGDPTYEHTRGPPPERHAR 481


>SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 313 CHLNRILRSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVR 182
           CHLN        ++H R  +    P  PKG+  R   L+ PP R
Sbjct: 14  CHLNSQQHLNSPQRHLRSNRAPPHPSHPKGRSGR-SGLRHPPTR 56


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 239  RPPISLPLPAMLPFNTRPQNPV*VTT*IPRAEFGTRVKYGASNTRSLVSVRLLVS 403
            +PPI    P M    T P +PV  +  +P +  G  V  GA+    +V+V L+V+
Sbjct: 996  KPPIDASSPMMSSSVTSPSSPVTPSDTVP-SPAGPEVMSGATIAGIVVAVLLVVT 1049


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 129 PSHQQRISCIRCCPCRLCRTGGRFSCLCRS 218
           P H ++    + C C  C  GG ++ +C+S
Sbjct: 185 PLHNRKDCPAKNCSCNNCGKGGHYAKVCKS 214


>SB_52567| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 370

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 93  TCSGNRNKLSVLPSHQQRISCIRCCPCRLCRTG 191
           TC    N+ S L +HQ+  S ++   C +C  G
Sbjct: 264 TCGKAFNRSSTLKTHQRTHSTVKEFVCHICEKG 296


>SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 286 QTAKSCLSDNLNTSCRIRHEGEVWRVKYTL 375
           +  KS L+D     CR + E +VW   +T+
Sbjct: 41  ENRKSTLTDISEPECRAQRESQVWTKAFTI 70


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -2

Query: 280 KRQHSRQGQRDRGPKLPKGQ-----MERHRQLKRPPVRHKRQGQQRMQ 152
           KR  SR+G+ +    L + +     M R R  +RPP R +R    R Q
Sbjct: 397 KRSGSREGKSEDNSSLRRSRSRERNMARDRDDRRPPSRSRRDSSLRRQ 444


>SB_47096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 325 RYSGCHLNRILRSGIKRQHSRQGQRDRGPKLPKG-QMERHRQLK 197
           RY  C    ++ +  +R+H  QG+R    K  +  + E  R LK
Sbjct: 43  RYRNCSSKEVISAASRREHPSQGRRSTYEKRDRNIRSENGRPLK 86


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 33   CAGRHRRGQADTFKRTIGG-GTCSGNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCL 209
            C   H++    T +R IG  GTCS    +           SC   CP + C+ G    CL
Sbjct: 1152 CCSGHQKSAVLTPQRNIGDIGTCSIMCKR-----------SCEEGCPEQCCQNGCPVECL 1200

Query: 210  --CRSICP 227
              C+  CP
Sbjct: 1201 SSCKPHCP 1208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,811
Number of Sequences: 59808
Number of extensions: 231101
Number of successful extensions: 1011
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)