Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C07f
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    29   0.027
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.3  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 0.027
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 12  ENYLSHLCAGRHRRGQAD--TFKRTIGGGTCSGNRNKLSVLPSHQQRISCI 158
           E++ +   A RHRR   D  +FK  +    C+ N   L     H +++ CI
Sbjct: 30  EHFENEERADRHRRVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKVGCI 80


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 298 ILRSGIKRQHSRQGQRDRGPKLPKGQME 215
           ++  G+   H RQ +   GP +P+G ++
Sbjct: 117 LVLGGLMMVHERQDRLTCGPVMPQGGVQ 144


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 329 AEFGTRVKYGASNTRSLVSVRLLVS 403
           AE G +V  G S   SLV   LLVS
Sbjct: 259 AEAGEKVTLGISILLSLVVFLLLVS 283


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 328  TRYSGCHLNRILRSGIKRQHSRQGQRDR 245
            +RY G  + R ++   + Q + + QR+R
Sbjct: 1637 SRYLGDRMQRPMKESQENQQNAETQRER 1664


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 328  TRYSGCHLNRILRSGIKRQHSRQGQRDR 245
            +RY G  + R ++   + Q + + QR+R
Sbjct: 1633 SRYLGDRMQRPMKESQENQQNAETQRER 1660


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 72  KRTIGGGTCSGNRNKLSVLPSHQQRISCIRC 164
           +R++  G  S  RN  +++ SH +    I C
Sbjct: 37  QRSVSSGFRSSLRNYKTLISSHDELPGHINC 67


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 246 GGRSYQRGRWSDIGS*SDRRCDISGRGSN 160
           GGRSY +GR   I + ++    +  + SN
Sbjct: 23  GGRSYGKGRGFIIQNNNNDDWSVGKKNSN 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,898
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)