Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C07f
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...    36   0.010
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...    35   0.024
At5g14450.1 68418.m01691 GDSL-motif lipase/hydrolase family prot...    30   0.51 
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c...    28   2.1  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    27   3.6  
At5g49100.1 68418.m06078 expressed protein                             26   8.3  
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR...    26   8.3  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 334 IRHEGEVWRVKYTLARIRKAARE 402
           +R + E+WRV+YTL+RIR AARE
Sbjct: 38  LRCKRELWRVQYTLSRIRNAARE 60


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score = 34.7 bits (76), Expect = 0.024
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +1

Query: 334 IRHEGEVWRVKYTLARIRKAARE 402
           +R++ E+WRV+Y+L+RIR AAR+
Sbjct: 38  LRNKRELWRVQYSLSRIRNAARD 60


>At5g14450.1 68418.m01691 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, pollen-expressed coil protein
           [Medicago sativa] GI:1110502; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 389

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 123 LRACCGYHCRCRHQWCA*K 67
           L+ CCGYH +  H WC  K
Sbjct: 313 LKVCCGYHEKYDHIWCGNK 331


>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 680

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 271 HSRQGQRDRGP-KLPKGQMERHRQLKRPPVRHKRQGQQRMQLIR 143
           HS   Q D    + P        +LKR  +R +R+GQ+ ++LIR
Sbjct: 131 HSTTNQTDESENQFPNVDFASPAKLKRQILRQERRGQRTLELIR 174


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 277 RQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQQR 158
           R  SR   R R P+ P     R+R     P   +R G  R
Sbjct: 154 RSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRRRGGPPR 193


>At5g49100.1 68418.m06078 expressed protein
          Length = 396

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 72  KRTIGGGTCSGNRNKLSVL 128
           KR +GGG  S NRN + V+
Sbjct: 202 KRVVGGGGSSSNRNGIDVI 220


>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1253

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +3

Query: 15  NYLSHLCAGRHRRGQADTFKRTIGGGTCSGNRNKLSV----LPSHQQRISCIRCCPCRLC 182
           +++SHLCA   RRG   +F R  G  + S   +KL      +    ++ S  + C   L 
Sbjct: 21  SFVSHLCAAFRRRG-ISSFIRENGSDSESNGFSKLETSRASVVVFSEKYSSSKSCMEELV 79

Query: 183 RTGGRFSCLCRSICP 227
           +   R    C ++ P
Sbjct: 80  KVSERRRKNCLAVVP 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,313,509
Number of Sequences: 28952
Number of extensions: 142695
Number of successful extensions: 451
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)