Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   6.8  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   6.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.0  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 190 LIVRNVANKMAFEFLKVKIHANIMTNKFKLFINNNYQLIH 309
           L++R    +   ++++ +  A  M +KF +F+N    LIH
Sbjct: 444 LVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTEELLIH 483


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 348 VKLSLDLIVLIHISMYSALKVLKCFIFCFNNAFYDYINMQPVVKLAFLIKLMKFN 512
           +K+   L+ ++++   S LK+   F  C N+ F D IN+   ++     +L+ +N
Sbjct: 705 IKVPRSLLTILNLHDRSQLKL---FEVCHNSEFKDPINLSNCLRNLLEKQLLSYN 756


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 378 IHISMYSALKVLKCFI 425
           +H+++YS ++V +CFI
Sbjct: 8   VHVAVYSGVEVYECFI 23


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 459 NMQPVVKLAFLIKLMKFNKNI 521
           N + V K+A L   +KFNKNI
Sbjct: 8   NGRKVPKIASLCNFLKFNKNI 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,971
Number of Sequences: 5004
Number of extensions: 24713
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)