Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311C02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.0
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 3.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 3.9
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 5.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 6.8
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 6.8
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 9.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 9.0
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 9.0
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 210 LWCCRVNAFNTAAESAGTRDSVAS 281
LW CR N+F+ A +DSV+S
Sbjct: 124 LWDCRSNSFSPIQVLADAKDSVSS 147
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 79 PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 258
P+ S V P P A++ AS+P + S P ++ + T + P Q P
Sbjct: 895 PAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP--PTASGTRVPPVQQPS 952
Query: 259 GP 264
P
Sbjct: 953 HP 954
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 58 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 210
+E + D+ S N S +P+ P V+ SSP + P+ +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 232 ALTRQHHKPFRIPAAVLQWAARSQKDLK-LEPLPGVVGPRVQELQK 98
A T H P + P+ +QW +S +DL+ ++ V+ +E K
Sbjct: 746 AFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVISEADEEAMK 791
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 16 LDSQCKQENIFSNWLEEKVD-LPSIFENISEVPERVDPQP 132
+D CKQ+ +FS E++ D L SI +S + ++ P
Sbjct: 242 IDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP 281
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 94 NISEVPERVDPQPPAAVLASSPFVTSQPTEE------LLREFETVYGAVELTHLTPPQSP 255
+ S P P PP++ L ++PF +P + LL + + T L PP +P
Sbjct: 348 SFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGLLSKQHRPRKNINFTPL-PPSTP 406
Query: 256 PGPAT 270
P+T
Sbjct: 407 SKPST 411
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 94 NISEVPERVDPQPPAAVLASS 156
N++ +P V P PPA + ASS
Sbjct: 221 NLARIPSDVKPVPPAHLSASS 241
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 154 SPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSY 288
+PF PT +R +++YG+ P SPP A Q + Y
Sbjct: 210 TPFSIHSPTASSVRSCQSIYGS--------PLSPPNSAFQAEMPY 246
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = +3
Query: 222 RVNAFNTAAESAGTRDSVASEL 287
R+N+FN++ ++G+ +VA+E+
Sbjct: 207 RLNSFNSSTSTSGSSSNVAAEV 228
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 20 TVNANKRIFSPTG*RKKLTSLRSSKTFLKFLNAWTHNPRQ 139
T+N ++R+ +P+G R L S LN H RQ
Sbjct: 564 TMNNSRRLRTPSGERSMRADLSQSPASYDSLNVPKHRRRQ 603
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.132 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,656
Number of Sequences: 5004
Number of extensions: 33718
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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