Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311C02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063) 28 4.1
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 28 4.1
SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 27 7.1
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 27 7.1
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) 27 7.1
SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_33598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 97 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPP 258
ISE P P+PP ++ ASS EE F ++ L PQ PP
Sbjct: 222 ISEAPPASTPKPPVSMPASSNVAVITVKEEGADPFLSIQAISFFKLLVLPQDPP 275
>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 250 SAAVLNALTRQHHKPFRI--PAAVLQWAARSQKDLKLEPLP 134
+ +LN++ QH +PF + L W++ S+++ K + LP
Sbjct: 7 TGCILNSILYQHKRPFNVCLTRKTLYWSSESKEETKPKNLP 47
>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
Length = 597
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +1
Query: 97 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV----ELTHLTPPQSPPGP 264
+S V P+P V P +T QP+ E + + E + TPP++ P P
Sbjct: 172 VSPVSREFSPKPTRTVFEFQPQITRQPSFEERKPLHSPVSPTSSFSEASPNTPPKTAPKP 231
Query: 265 A 267
A
Sbjct: 232 A 232
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +1
Query: 97 ISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV----ELTHLTPPQSPPGP 264
+S V P+P V P +T QP+ E + + E + TPP++ P P
Sbjct: 117 VSPVSREFSPKPTRTVFEFQPQITRQPSFEERKPLHSPVSPTSSFSEASPNTPPKTAPKP 176
Query: 265 A 267
A
Sbjct: 177 A 177
>SB_5882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 244 AVLNALTRQHHKPFRIPAAVLQWAARSQKDLKLEPLPGVVGPRVQE 107
AVL AL+ HH+ P V W + D+ P+ V+ E
Sbjct: 7 AVLTALSDLHHRKAAGPDGVPNWLLKDYADILASPVTSVLNSSFAE 52
>SB_32955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 220 VELTHLTPPQSPPGPATQ 273
+ LT LTPPQ PP P Q
Sbjct: 74 LRLTRLTPPQPPPQPPDQ 91
>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2235
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 223 RQHHKPFRIPAAVLQWAARSQKDLKLEP 140
+QH +P R P A + AAR + LEP
Sbjct: 1830 KQHQEPARTPVAAVPAAARDARITSLEP 1857
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 10 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPE 114
++ D Q K++N FS WLEE D I E ++P+
Sbjct: 31 EKADRQTKKKNGFSLWLEENRD--QIEEENPDIPD 63
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 10 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPE 114
++ D Q K++N FS WLEE D I E ++P+
Sbjct: 324 EKADRQTKKKNGFSLWLEENRD--QIEEENPDIPD 356
>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
Length = 1058
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 332 WHRRKKRGRLWHLFRLTSCRKVTS--VTWTPSRNWSV--TEPLNWHL 460
WH + GRLWH+ R TS V +P +W V +WH+
Sbjct: 286 WHVMARHGRLWHVM----ARHGTSWQVMASPGTSWQVMARHGTSWHV 328
>SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 88 FENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 246
+ + SE+P + P PP A L + ++ + T R V+ ++ H+ PP
Sbjct: 144 YPHTSEIPTFL-PLPPPAGLTMAEYLEVRSTFHTPRPMIPVFPPPQMKHINPP 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.132 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,433,829
Number of Sequences: 59808
Number of extensions: 275085
Number of successful extensions: 603
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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