Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C01f
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931...    27   6.0  
02_02_0226 + 8056785-8057112,8057249-8057517,8057634-8058101,805...    27   6.0  

>04_03_0010 -
           9318031-9318275,9318364-9319123,9319528-9319845,
           9319921-9320229,9320594-9321013
          Length = 683

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 290 ITDTDSQICFHRIISSNKPIKAGNITYE 207
           + DT   I  HR  ++NK +K G IT E
Sbjct: 291 LDDTPVDISLHRYTTNNKSVKRGCITTE 318


>02_02_0226 +
           8056785-8057112,8057249-8057517,8057634-8058101,
           8058198-8058632
          Length = 499

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 340 FIKFMICLCITLLCFG 387
           F +F IC C+ LLC G
Sbjct: 6   FSRFSICFCVLLLCHG 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,034,820
Number of Sequences: 37544
Number of extensions: 112845
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)