Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311C01f
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-1|CAA93081.1|  850|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U97004-3|AAB52277.1|  365|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z68879-1|CAA93081.1|  850|Caenorhabditis elegans Hypothetical
           protein K08F4.1 protein.
          Length = 850

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 198 NESLVRYITSFYWFI*RYNSMETNLAVRISYXNQERNIF 314
           N S+++Y+ SF  F+  + ++ T+  V I+Y   E+NIF
Sbjct: 612 NWSVLKYVFSF--FVSLHLNIATHARVPIAYPQLEQNIF 648


>U97004-3|AAB52277.1|  365|Caenorhabditis elegans Hypothetical
           protein R08E5.3 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 176 NLAHANLFFNEANIXNRLNSF 114
           NLA +N+  N  NI NRLN F
Sbjct: 17  NLAVSNVISNAINIGNRLNLF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,714,054
Number of Sequences: 27780
Number of extensions: 119762
Number of successful extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)