Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 215  YKVTCKSCFERHKXXF 262
            YK TC+  FERHK  F
Sbjct: 3008 YKYTCRGLFERHKLLF 3023


>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 329 FYH*QQH-PPVHNEAYHNQYQLNQH 400
           +YH QQH PP   + +H+Q Q   H
Sbjct: 470 YYHHQQHRPPQRQQYFHHQQQRKPH 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,029
Number of Sequences: 59808
Number of extensions: 196236
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)