Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear recep...    27   6.2  
AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormo...    27   6.2  

>U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical
           protein C37C3.8b protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 106 GLPFYKYLKFIVNSIYRESIN 44
           GLPF +YL FI+ S ++ S+N
Sbjct: 32  GLPFARYLNFILPSEFKMSLN 52


>AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear receptor
           NHR-124 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 TFFQFLHKRGQVKKNRY*CIMNRC 175
           TFFQ LH   + + N Y C++N C
Sbjct: 121 TFFQHLHALNETRYNAY-CVINIC 143


>AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 124 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 TFFQFLHKRGQVKKNRY*CIMNRC 175
           TFFQ LH   + + N Y C++N C
Sbjct: 121 TFFQHLHALNETRYNAY-CVINIC 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,645
Number of Sequences: 27780
Number of extensions: 164733
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)