Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   160   1e-40
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   2.2  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   6.8  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   9.0  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   9.0  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   9.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   9.0  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  160 bits (389), Expect = 1e-40
 Identities = 69/119 (57%), Positives = 92/119 (77%)
 Frame = +2

Query: 11  MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 190
           M+ Q+K++ SFEKRK E ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 191 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 367
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  ED FLYI +S EN +G  F
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 2   NINMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEK 115
           NIN+   YK E    +R  E    ++KYP  +   + K
Sbjct: 154 NININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISK 191


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 355 WKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFYY 474
           WK++ + S + S    D  +   LS+ L  CI++  F ++
Sbjct: 124 WKMVVDVSPAFSVNPIDKKLAIGLSVGLSCCILIVLFLHF 163


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -2

Query: 391 NYLKVNNLELISIDIF-VGKC 332
           N  KVN ++LISI++F +G C
Sbjct: 71  NKSKVNEIQLISIEVFIIGIC 91


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 68  KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 157
           KIR +YPDR+      AP  +  D   + Y
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPY 183


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 446 VLFYGIFFIINWHIILFL 499
           VLF+ + FII  HI  FL
Sbjct: 412 VLFFSLLFIIGIHIFYFL 429


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 32  EHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKK 151
           EH  + RKA  E  R K       + E   + RL D  K+
Sbjct: 111 EHDLQARKANLESYRAKLEKEYKTLAENKIQQRLSDGTKQ 150


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 256 IVHEEEKCVFRPQVNTFPDQEVE 188
           IVHE++K V    V+T PD+  E
Sbjct: 77  IVHEDDKLVGSDGVSTTPDEYFE 99


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 50  RKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDL 175
           RK   +K  +   D+   I EK    RLGD +KK     S++
Sbjct: 315 RKPSADKAEKT--DKTDAIAEKVSDIRLGDGEKKSSETDSEV 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,644
Number of Sequences: 5004
Number of extensions: 46192
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)