Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311B11f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 235 2e-62
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 95 4e-20
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 27 7.1
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1) 27 7.1
SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16) 27 7.1
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 27 7.1
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 27 7.1
SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 27 7.1
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 27 9.4
SB_24286| Best HMM Match : DUF1368 (HMM E-Value=4.1) 27 9.4
>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 119
Score = 235 bits (575), Expect = 2e-62
Identities = 106/116 (91%), Positives = 114/116 (98%)
Frame = +2
Query: 11 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 190
MK++YKEEH FEKR+AEGEKIR+KYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 191 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 358
YFLIRKRIHLRPEDALFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 140
Score = 94.7 bits (225), Expect = 4e-20
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Frame = +2
Query: 23 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 199
+K+ SF R+ E IR K+P ++PVIVE+ K + L LDK K+LVP +LT+ QF +
Sbjct: 14 FKQRKSFVSRRDEVAGIRAKFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTI 73
Query: 200 IRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 361
IR R+ L A + VNN + S TM LY+E DED FLY+ ++ + ++G+
Sbjct: 74 IRNRMSLSSTQAFYLIVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 352 DIFVGKC-YV*KEIFIMVFLIERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQE 194
D+ VG C Y + L +RP +++V ++++ VF+P +T DQ+
Sbjct: 132 DLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQ 185
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 223
RV + + + + D K YL P D G+FY L +IH+R
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIR 255
>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 643
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = -2
Query: 391 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLIERPHCCRCGWNDIVHEEEK 236
N L+ NN +L + +F G C+V K + IM FL+ C R + + +++K
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDK 635
>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 89 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
+RV + + + + D K YL P D G+FY L + H P
Sbjct: 81 ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 126
>SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 158 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 202
>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 640
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 77 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 121
>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
Length = 417
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 34 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 78
>SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16)
Length = 394
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 324 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 368
>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 232 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 276
>SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 201
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 131 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 175
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 450 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 494
>SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 179
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 92 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 226
RV + + + + D K YL P D G+FY L + H P
Sbjct: 109 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 153
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 27.1 bits (57), Expect = 9.4
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = +2
Query: 38 SFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIH 217
+FEK+ + +++R KYPD EK ++ L DL+++ + TV + Y I
Sbjct: 362 AFEKKVTKNQEMRIKYPDN----PEKFMESEL-DLNEEVQKLHVLATVPEMYHSIVDLNA 416
Query: 218 LRPEDALFFFVNNVIPPTSATMGSLYQEHHDED 316
+ L N V+ S + L QE D D
Sbjct: 417 VNTMLGLISHDNTVLSDISIAVIDLLQEMTDVD 449
>SB_24286| Best HMM Match : DUF1368 (HMM E-Value=4.1)
Length = 436
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 193 VELANC*IRRN*ILLFVEVSKPSLRRFLYNYRNAIWIFPA 74
VELA+C + + L V + S+R L+ Y N++ IF A
Sbjct: 345 VELASCLLGVSSKLRDVSQGRCSIRAVLHEYNNSVHIFSA 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,550
Number of Sequences: 59808
Number of extensions: 307900
Number of successful extensions: 672
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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