Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B08f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    74   9e-16
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.8  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   5.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 73.7 bits (173), Expect = 9e-16
 Identities = 32/78 (41%), Positives = 48/78 (61%)
 Frame = +3

Query: 261 QITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQT 440
           ++ V G D P P   FE  G   + ++ + K G+  PT IQ    P+ LSGRD++  AQT
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 441 GSGKTLAYILPAIVHIIN 494
           GSGKT A++LP I ++++
Sbjct: 205 GSGKTAAFMLPIIHNLLS 222



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 419 VTARESYWPALCLNRSGVRETLF*NLFHSIVRETTLFKKYA 297
           VT  ++  P      SG+R  L  N+  S   + T  +KYA
Sbjct: 148 VTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYA 188


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 454 PWHTFY 471
           PWHTFY
Sbjct: 486 PWHTFY 491


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
 Frame = +3

Query: 327 DYAMKEILKQGFPNP-----TPIQAQGWPIALSGRDMVGIAQTGSGK 452
           DYA+K   K+GFP        P   + + +  +    VG    G G+
Sbjct: 397 DYAVKFWTKKGFPKSKIVLGVPFFGRSFTLQFTNETQVGAPIKGPGR 443


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 194 EIFLEWCERYGVPVNFSKVTA 132
           +IF+E  E+Y V + ++K+ +
Sbjct: 226 KIFIECIEQYNVILRYTKIVS 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,946
Number of Sequences: 336
Number of extensions: 2659
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)