Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311B08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 167 7e-43
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 83 2e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 75 5e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 68 7e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 66 3e-12
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 62 4e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 56 3e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 55 7e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 1e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 2e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 4e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 51 9e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 3e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 8e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 45 6e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 4e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 41 1e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 38 0.001
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 37 0.002
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 36 0.004
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.004
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 33 0.026
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.045
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 31 0.10
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.3
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 3.9
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 167 bits (407), Expect = 7e-43
Identities = 77/139 (55%), Positives = 97/139 (69%)
Frame = +3
Query: 105 RSNFKNDQPGGNLRKIHWDTVTLTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRD 284
R+ +++D PG NL K W TL PFQK+FY H NV+ R+ +E+ YR + +I V G +
Sbjct: 57 RNFYESDGPGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLN 116
Query: 285 VPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY 464
VP P FEE GFP+Y +KE+ + GF PTPIQ Q WP+A+SGRDMVGI+ TGSGKTL+Y
Sbjct: 117 VPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSY 176
Query: 465 ILPAIVHIINQPRLLRDDG 521
LPAIVHI QP L DG
Sbjct: 177 CLPAIVHINAQPLLSPGDG 195
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 83.4 bits (197), Expect = 2e-17
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Frame = +3
Query: 180 FQKNFYVPHPNVQRRTQSEIEAYR-SQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQ 356
F+K+FYV ++ + +E++ R S I ++G D P P + + G + I
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 357 GFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
G+ PT IQAQ P SGRD++G+A+TGSGKT+A++LP HI +Q L +G
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 75.4 bits (177), Expect = 5e-15
Identities = 34/86 (39%), Positives = 52/86 (60%)
Frame = +3
Query: 249 RSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVG 428
+ + I++KG D+P P +EE G P +K + K + P+ IQ P+ L +D++G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 429 IAQTGSGKTLAYILPAIVHIINQPRL 506
IA+TGSGKT A+I+P I+ I P L
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPL 317
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 68.1 bits (159), Expect = 7e-13
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = +3
Query: 273 KGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGK 452
KG+ + F+ G ++ I K+GF PTPIQ + P+ L GRD+VG+A+TGSGK
Sbjct: 60 KGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGK 119
Query: 453 TLAYILPAIVHI 488
T A+++P I H+
Sbjct: 120 TAAFVIPMIEHL 131
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 66.1 bits (154), Expect = 3e-12
Identities = 31/65 (47%), Positives = 41/65 (63%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F+E G D + K GF PTPIQ + P+ L+ RD++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 486 IINQP 500
+ N P
Sbjct: 108 LWNNP 112
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
++E LK + PTPIQA WP L+GRD+VGIA+TGSGKT+A+ +PA+ ++
Sbjct: 178 LREGLKN-YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 56.0 bits (129), Expect = 3e-09
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Frame = +3
Query: 321 FPDYAMKE-----ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F DY +K I + GF P+PIQ + PIALSGRD++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.8 bits (126), Expect = 7e-09
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPR 503
+K + GF PT IQ + P+AL G+D+VG A TGSGKT A+I+P + ++ +P+
Sbjct: 271 LKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK 326
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 264 ITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTG 443
+ V G D+ P F + ++ I G+ PTP+Q PI SGRD++ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 444 SGKTLAYILPAI 479
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 53.2 bits (122), Expect = 2e-08
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = +3
Query: 339 KEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRL 506
+ I K F PT +Q++ P+AL G+D+V A+TGSGKT AY++P + ++ Q ++
Sbjct: 27 RAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQI 82
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.4 bits (120), Expect = 4e-08
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +3
Query: 339 KEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
K I + GF T IQ + P L+GRD++G A+TGSGKTLA+++P I
Sbjct: 102 KAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 51.2 bits (117), Expect = 9e-08
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP 473
F+ + + QGF TP+QA P+ L +D+V A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.6 bits (113), Expect = 3e-07
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +3
Query: 339 KEILKQG-FPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
K LK F T IQ Q P AL GRD++G A+TGSGKTLA+I+P I ++
Sbjct: 51 KSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENL 101
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.0 bits (109), Expect = 8e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHII 491
K GF P PIQ+ P A G D++G A TGSGKTLA+ +P + H +
Sbjct: 139 KAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCL 185
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.2 bits (102), Expect = 6e-06
Identities = 28/94 (29%), Positives = 46/94 (48%)
Frame = +3
Query: 198 VPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTP 377
VP P+++ + +++ ++ + V G + P F EG + + KQ T
Sbjct: 17 VPQPSIKEKEAKKLQGI-TKGKAKVTGNNPVDPIEEFPEG----ILCENLKKQNITECTT 71
Query: 378 IQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
IQ P S RD++ A TGSGKT+AY+ P +
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 4e-05
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Frame = +3
Query: 93 NRDDRSNFKNDQPGGNLRKIHWDTVTLTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITV 272
N D ++ +D+ G + + + D + N N ++ E +++++ V
Sbjct: 39 NEDQKATNLSDRLGPKITE-NVDAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRV 97
Query: 273 KGRDVPAP--SIFFEEGGFPDYAMKEILKQG-----FPNPTPIQAQGWPIALSG--RDMV 425
K D+ A S F F + +K L +G F P+ IQ + P+ LS R+M+
Sbjct: 98 KLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMI 157
Query: 426 GIAQTGSGKTLAYILPAIVHI 488
G +Q+G+GKT A+ L + +
Sbjct: 158 GQSQSGTGKTAAFALTMLSRV 178
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGI--AQTGSGKTLAYILPAIVHIINQPRLL 509
K PT IQ+ P L+ D AQTGSGKTLAY+LP + +I P+ L
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNL 210
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F + G + + + PT IQ L GR+ +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 282 DVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLA 461
DV A S F EE + ++ I G+ P+ +Q++ GRD++ AQ+G+GKT
Sbjct: 16 DVNAVSSF-EEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTAT 74
Query: 462 Y 464
+
Sbjct: 75 F 75
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.9 bits (79), Expect = 0.004
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +3
Query: 318 GFPDYAMK-EILK----QGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
GF D+ +K E+L+ GF +P+ +Q P ++ G D++ A++G GKT ++L +
Sbjct: 52 GFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQ 111
Query: 483 HI 488
I
Sbjct: 112 QI 113
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.9 bits (79), Expect = 0.004
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 294 PSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGI-AQTGSGKTLAYIL 470
P++F E + + GF TP+Q + + + A+TG+GKTLA++L
Sbjct: 36 PTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL 95
Query: 471 PAIVHII-NQPRL 506
A ++ +PRL
Sbjct: 96 VAFKDVLKGKPRL 108
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 33.1 bits (72), Expect = 0.026
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F++ ++ I GF P+ IQ + L RD++ AQ+G+GKT + + +
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 486 I 488
I
Sbjct: 81 I 81
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.3 bits (70), Expect = 0.045
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIV 482
LSG+D+ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 31.1 bits (67), Expect = 0.10
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 396 PIALSGRDMVGIAQTGSGKTLAYILPAI 479
P+ G D+ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.3
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIV 482
L+ +++ + TG GK+L++++PA++
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALI 1229
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.3
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIV 482
L+ +++ + TG GK+L++++PA++
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALI 1229
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 132 GGNLRKIHWDTVTLTPFQKNFYVPHP 209
G NL + W TP +N Y HP
Sbjct: 223 GNNLTRTFWANGNPTPLDRNAYGTHP 248
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 348 LKQGFPNPTPIQAQGWPIALS 410
LK F P+P AQGW AL+
Sbjct: 780 LKLRFAGPSPKDAQGWIDALN 800
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,906
Number of Sequences: 5004
Number of extensions: 44839
Number of successful extensions: 147
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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