Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311B08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 6e-26
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 88 4e-18
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 77 1e-14
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 3e-13
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 71 4e-13
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 65 3e-11
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 63 1e-10
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 5e-10
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 59 3e-09
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 56 1e-08
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 56 1e-08
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 55 3e-08
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 55 4e-08
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 50 9e-07
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 50 1e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 42 4e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 41 5e-04
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 41 5e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 38 0.004
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 37 0.009
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 35 0.035
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 33 0.11
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 32 0.33
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 30 1.0
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 30 1.3
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 29 1.8
SB_6170| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_32332| Best HMM Match : SURF6 (HMM E-Value=6.9) 29 3.1
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_44517| Best HMM Match : TIL (HMM E-Value=3.4) 28 4.1
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_12116| Best HMM Match : Keratin_B2 (HMM E-Value=4) 28 5.4
SB_32330| Best HMM Match : DUF1104 (HMM E-Value=8.2) 27 7.1
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_22385| Best HMM Match : P2_Phage_GpR (HMM E-Value=6.9) 27 7.1
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 113 bits (273), Expect = 6e-26
Identities = 55/115 (47%), Positives = 72/115 (62%)
Frame = +3
Query: 177 PFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQ 356
PF KNFY HP + ++++ EI+ R + I V G P I F GF + M I K
Sbjct: 476 PFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRKL 535
Query: 357 GFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
+ PT IQ Q PIALSGRD++GIA+TGSGKT A++ PA+VHI++QP L DG
Sbjct: 536 EYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDG 590
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/103 (37%), Positives = 64/103 (62%)
Frame = +3
Query: 210 NVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQ 389
N++ T+ + +R I+ KG +P P ++E PD ++ + K G+ +PTPIQ Q
Sbjct: 71 NLEEMTERDWRIFREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQ 130
Query: 390 GWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDD 518
PI L RD++G+A+TGSGKT A+ +P +V I+ P++ RD+
Sbjct: 131 AIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDN 173
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 76.6 bits (180), Expect = 1e-14
Identities = 37/98 (37%), Positives = 55/98 (56%)
Frame = +3
Query: 180 FQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQG 359
F ++Y + V R + ++ R ++ I ++G D P P F + P + K+
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 360 FPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP 473
F PTPIQ Q +SGRD++G+A+TGSGKTLAY LP
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLP 129
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 71.7 bits (168), Expect = 3e-13
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +3
Query: 141 LRKIHWDTVTLTPFQKNFYVPHPNVQRRTQSEIEAYR-SQHQITVKGRDVPAPSIFFEEG 317
L+ + TV PF+K+FYV P + + T E + +R S I V+G++ P P + +
Sbjct: 51 LQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQT 110
Query: 318 GFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQT 440
G + + K + PTPIQAQ P+ +SGRDM+ I T
Sbjct: 111 GVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 71.3 bits (167), Expect = 4e-13
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = +3
Query: 93 NRDDRSNFKNDQPGGNLRKIHWDTVTLTPFQKNF-YVPHPNVQRRTQSEIEAYRSQHQIT 269
N+++ SN N+ +K D + T N+ Y HP + T +++ R + +I
Sbjct: 130 NQEESSNVYNETD--ECQKNERDNLIYT--DSNYTYKEHPTIAALTAEQVKQLRDKMEIK 185
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSG 449
VKG V +P + F F + K + G+ +PTPIQ Q P+ LSGRD++ A TGSG
Sbjct: 186 VKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSG 245
Query: 450 KTL 458
K L
Sbjct: 246 KLL 248
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +3
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSG 449
V G + P F E F + M I + G+ PTP+Q PI ++GRD++ AQTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 450 KTLAYILPAIVHIINQ 497
KT AY+LP + +I Q
Sbjct: 529 KTAAYMLPVLTSLIKQ 544
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +3
Query: 345 ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
++K GF PT IQ QG P+ALSGRD++G A+TGSGKTLA+++P I
Sbjct: 65 LMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPII 109
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 63.3 bits (147), Expect = 1e-10
Identities = 40/102 (39%), Positives = 49/102 (48%)
Frame = +3
Query: 216 QRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGW 395
+ R Q E++AYR +TV GR+VP P FEE FPDY ++GF PT IQAQ
Sbjct: 55 EARGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ-- 112
Query: 396 PIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
+ILP IVHI +QP L DG
Sbjct: 113 ----------------------FILPGIVHINHQPLLQPGDG 132
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +3
Query: 255 QHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIA 434
Q ++ V G + FEE + + + K + PTP+Q PI ++GRD++ A
Sbjct: 696 QIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACA 755
Query: 435 QTGSGKTLAYILPAIVHIIN 494
QTGSGKT A++LP + ++N
Sbjct: 756 QTGSGKTAAFLLPVMTSMMN 775
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/87 (34%), Positives = 46/87 (52%)
Frame = +3
Query: 255 QHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIA 434
Q ++ ++G P P + F +Y + G PT +Q WP L GRD+ G+A
Sbjct: 176 QDEVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVA 231
Query: 435 QTGSGKTLAYILPAIVHIINQPRLLRD 515
GSGK LAY+LP I+H I + + ++
Sbjct: 232 IEGSGKRLAYLLP-IIHQITESSVYQE 257
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Frame = +3
Query: 240 EAYRSQHQITVKGRDVPAPSIFFEEGG-FPDYAMKE-----ILKQGFPNPTPIQAQGWPI 401
E++++ ++ K + +G F DY +K I ++GF P+PIQ + P+
Sbjct: 21 ESWKANLKLPPKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPV 80
Query: 402 ALSGRDMVGIAQTGSGKTLAYILPAI 479
AL+GRD++ A+ G+GKT AY++P +
Sbjct: 81 ALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Frame = +3
Query: 240 EAYRSQHQITVKGRDVPAPSIFFEEGG-FPDYAMKE-----ILKQGFPNPTPIQAQGWPI 401
E++++ ++ K + +G F DY +K I ++GF P+PIQ + P+
Sbjct: 21 ESWKANLKLPPKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPV 80
Query: 402 ALSGRDMVGIAQTGSGKTLAYILPAI 479
AL+GRD++ A+ G+GKT AY++P +
Sbjct: 81 ALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +3
Query: 183 QKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAP----SIFFEEGGFPDYAMKEIL 350
QK + + + Q +I +R + I VKG DVP P S E GFPDY + +
Sbjct: 120 QKENKLSANKLAEKHQEKINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQ 179
Query: 351 KQGFPNPTPIQAQGWPIALSG 413
++G+ PTPIQ Q P+ G
Sbjct: 180 ERGYTTPTPIQMQATPLMAHG 200
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALS-GRDMVGIAQTGS 446
VKG + P +E G ++ + QGF PTPIQ+ P AL RD++G A+TGS
Sbjct: 122 VKGSLIDMPE--WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGS 179
Query: 447 GKTLAYILPAIVHI 488
GKTLA+ +P I HI
Sbjct: 180 GKTLAFGIPIIQHI 193
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +3
Query: 327 DYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQP 500
D A+ E+ GF +PTPIQA P+AL G+D+ A TG+GKT A++LP + ++ +P
Sbjct: 22 DRAVNEL---GFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +3
Query: 255 QHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIA 434
Q ++ V G + FEE + + + K + PTP+Q PI ++GRD++ A
Sbjct: 119 QIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACA 178
Query: 435 QTGSGKT 455
QTGSGKT
Sbjct: 179 QTGSGKT 185
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
FE+ + + + G+ PTP+Q PI RD++ AQTGSGKT A+++P +
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSR 936
Query: 486 I 488
I
Sbjct: 937 I 937
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 318 GFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQ 497
G + + + + G PT IQ P L GRD +G A+TGSGKT A+ LP + + +
Sbjct: 13 GLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDD 72
Query: 498 P 500
P
Sbjct: 73 P 73
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
++ I GF T IQ + L GRD++G A+TGSGKTLA+++P +
Sbjct: 584 LQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLR 512
++ + + GF P+PIQ + P+ G D++ A++G+GKT + + A+ ++I + ++
Sbjct: 25 LRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENVITESNCIQ 83
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F G ++++ K G P PIQ + P S + ++ ++TG+GK+L ++LP++
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = +3
Query: 294 PSIFFEEGGFPDYAMKE-----ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTL 458
PS+ EG F + + + + +G PIQA + G D++G A+TG+GKTL
Sbjct: 66 PSVAQREGDFSKFRISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTL 125
Query: 459 AYILPAI 479
++ LP +
Sbjct: 126 SFALPLV 132
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +3
Query: 318 GFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQ 497
G D +K + PT IQ P + ++ AQTGSGKTLAY+ P +VH + +
Sbjct: 384 GLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVHRLRE 442
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 354 QGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY---ILPAIVHIINQPRLL 509
+GF P+ IQ + L GRD++ AQ+G+GKT + +L AI + +P+ L
Sbjct: 15 EGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQAL 69
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +3
Query: 396 PIALSGRDMVGIAQTGSGKTLAYILP 473
P+ + G+D+V +A+TGSGKT A+++P
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIP 338
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/32 (43%), Positives = 25/32 (78%)
Frame = +3
Query: 414 RDMVGIAQTGSGKTLAYILPAIVHIINQPRLL 509
+D++G+A+TGSGKT A+ LP + +++ P+ L
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRL 33
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 35.1 bits (77), Expect = 0.035
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +3
Query: 252 SQHQITVKGRDVPAP---SIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGR-- 416
++H++ V D +P + FEE + + GF P+ IQ P+ L+
Sbjct: 84 TKHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPV 143
Query: 417 DMVGIAQTGSGKTLAYILPAIVHI 488
+M+ +Q+G+GKT A++L + +
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRV 167
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 288 PAPSIFFEEGGFPDYAMKEILKQ-GFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY 464
P + E G D A+ + G+ + P+Q Q L+ +D + + TG+GKT+ Y
Sbjct: 112 PINTANIETDGSDDRALHALQHVFGYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICY 171
Query: 465 ILPAIV 482
+PA++
Sbjct: 172 AIPALL 177
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 315 GGFPDYAMKEILKQGFPNPTPIQAQGWPIA-LSGRDMVGIAQT 440
G PD ++ + QGF PTPIQ+ P A L RD++G A+T
Sbjct: 78 GVAPDI-LRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAET 119
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 324 PDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPR 503
P K + + GF + Q Q LSG + + TG+GK+L Y LPA ++ P
Sbjct: 510 PPEVYKALGQLGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSPC 569
Query: 504 L 506
L
Sbjct: 570 L 570
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 QKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDV-PAPSIFFEEGGFPDYAMKEILKQG 359
+ F + HPN+Q + + + E QH K R P ++F+ G+ + +++
Sbjct: 949 RSRFDLLHPNLQGKIRQKQEQMNGQHDAHAKDRQFKPGDHVYFKNFGYGPKWLPGVIRMN 1008
Query: 360 F 362
F
Sbjct: 1009 F 1009
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIV 482
+SG D + I TG GK+L + LPA+V
Sbjct: 102 MSGVDCILIMPTGGGKSLCFQLPAVV 127
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 143 SKNSLGHRNAHTIPEKFLCPSSECSTSNSKRN*GLS*PTSDNGERSR 283
S++S + ++ E PSS+CS+SN+ + GL P ++ +RS+
Sbjct: 441 SRDSNYGTESSSVNEDLQRPSSQCSSSNNSKCAGLLKPQENSKQRSK 487
>SB_6170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -1
Query: 263 LMLATIGLNFALSSTLNIRMRDIEIFLEWCERYGVPVNFSK 141
L + TI L F S T N +RDI+I + E Y PVN +K
Sbjct: 9 LTVITIALLF-FSPTYNFTVRDIKIGVVASESYESPVNIAK 48
>SB_32332| Best HMM Match : SURF6 (HMM E-Value=6.9)
Length = 195
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 159 DTVTLTPFQKNFYVPHPNVQRR-TQSEIEAYRSQHQITVKGRDVP 290
D VTL F KN + +QRR ++++E + + ++ K VP
Sbjct: 24 DKVTLRVFDKNLKISDEEIQRRLKEADLEGHGFKKEVVTKLMKVP 68
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 399 IALSGRDMVGIAQTGSGKTLAY-ILPAI 479
++ +GRD +G+ TG GK++ + ILPA+
Sbjct: 191 LSYTGRDGIGVLPTGYGKSVIFHILPAM 218
>SB_44517| Best HMM Match : TIL (HMM E-Value=3.4)
Length = 145
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 475 AGKMYAKVLPDPVWAMPTMSRPERAIGQPCA 383
AG+++ L PV P SR + +G PCA
Sbjct: 2 AGRVFGYALCQPVSNCPYHSRRDECLGMPCA 32
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 378 IQAQGWPIALSGRDMVGIAQ-TGSGKTLAYILPAIV 482
+Q + GR V ++ TGSGK+L Y LPA+V
Sbjct: 22 LQQRACETVSKGRQDVFVSMPTGSGKSLCYQLPAVV 57
>SB_12116| Best HMM Match : Keratin_B2 (HMM E-Value=4)
Length = 145
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 475 AGKMYAKVLPDPVWAMPTMSRPERAIGQPCA 383
AG+++ L PV P SR + +G PCA
Sbjct: 2 AGRVFGYALCHPVSNCPYHSRRDECLGMPCA 32
>SB_32330| Best HMM Match : DUF1104 (HMM E-Value=8.2)
Length = 169
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 159 DTVTLTPFQKNFYVPHPNVQRR-TQSEIEAYRSQHQITVKGRDVP 290
D VTL F KN +QRR ++++E + + ++ K VP
Sbjct: 24 DKVTLRVFDKNLKTSDEEIQRRLKEADLEGHGFKKEVVTKLMKVP 68
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIVHI 488
LS RD++ AQ+G+GKT + + + I
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEI 147
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = -3
Query: 102 HPDSPFSQNPCHCL-----VLHGRHPYRRVHHP 19
HP +PFS+ CH L + H P+R++ HP
Sbjct: 122 HPLAPFSRQMCHPLAHFRQMCHPLAPFRQMCHP 154
>SB_22385| Best HMM Match : P2_Phage_GpR (HMM E-Value=6.9)
Length = 93
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 363 PNPTPIQAQGWPIALSGRDMVGIAQ 437
P P QGWPI L+ R + +AQ
Sbjct: 5 PYPLSHWKQGWPIVLARRPLAAVAQ 29
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 227 SSTLNIRMRDIEIFLEWCERYGVPVNFSKVTARL 126
SS+ ++ +D+ L+WC +G +F+K+T +L
Sbjct: 392 SSSEVLQSQDVTSSLQWCVAHGAIRSFNKLTWKL 425
>SB_23605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 227 SSTLNIRMRDIEIFLEWCERYGVPVNFSKVTARL 126
SS+ ++ +D+ L+WC +G +F+K+T +L
Sbjct: 5 SSSEVLQSQDVTSSLQWCVAHGAIRSFNKLTWKL 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,145
Number of Sequences: 59808
Number of extensions: 342489
Number of successful extensions: 826
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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