Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311B08f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 160 5e-40
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 157 6e-39
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 157 6e-39
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 115 2e-26
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 114 4e-26
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 113 5e-26
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 113 9e-26
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 113 9e-26
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 113 9e-26
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 112 1e-25
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 95 3e-20
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 86 1e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 76 2e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 75 4e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 70 1e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 69 3e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 64 4e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 64 5e-11
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 62 3e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 60 7e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 59 2e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 59 2e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 59 2e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 4e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 58 5e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 57 8e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 56 1e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 56 1e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 55 3e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 6e-08
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 54 8e-08
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 54 8e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 52 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 51 4e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 51 5e-07
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 50 7e-07
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 50 7e-07
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 50 9e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 49 2e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 49 2e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 48 3e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 3e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 48 5e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 2e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 46 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 3e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 3e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 44 5e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 44 8e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 42 2e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 42 2e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 42 3e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 41 4e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.001
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 39 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.002
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 35 0.029
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 35 0.029
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 35 0.029
At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to ... 34 0.050
At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplas... 34 0.050
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 33 0.088
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 32 0.27
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 31 0.62
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 30 0.82
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 30 1.1
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 30 1.1
At2g23120.1 68415.m02758 expressed protein 29 1.4
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 29 1.9
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 28 3.3
At5g58890.1 68418.m07378 MADS-box family protein various predict... 27 5.8
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 27 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 160 bits (389), Expect = 5e-40
Identities = 74/136 (54%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Frame = +3
Query: 117 KNDQPGGNL-RKIHWDTVTLTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPA 293
K D G RK+ D LTPF+KNFYV P V T +E+E YR +ITV+G+D+P
Sbjct: 39 KKDNDGNESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPK 96
Query: 294 PSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP 473
P F + GFPDY ++E+ K GF PTPIQ+QGWP+A+ GRD++GIA+TGSGKTL+Y+LP
Sbjct: 97 PVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLP 156
Query: 474 AIVHIINQPRLLRDDG 521
AIVH+ QP L DG
Sbjct: 157 AIVHVNAQPMLAHGDG 172
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 157 bits (380), Expect = 6e-39
Identities = 68/117 (58%), Positives = 88/117 (75%)
Frame = +3
Query: 171 LTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEIL 350
L F+KNFYV P VQ T+ ++ YR++ I+V+GRDVP P F++ FPD ++ I
Sbjct: 122 LVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIA 181
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
K GF PTPIQAQGWP+AL GRD++GIA+TGSGKTLAY+LPA+VH+ QPRL +DDG
Sbjct: 182 KLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDG 238
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 157 bits (380), Expect = 6e-39
Identities = 68/117 (58%), Positives = 88/117 (75%)
Frame = +3
Query: 171 LTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEIL 350
L F+KNFYV P VQ T+ ++ YR++ I+V+GRDVP P F++ FPD ++ I
Sbjct: 122 LVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIA 181
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
K GF PTPIQAQGWP+AL GRD++GIA+TGSGKTLAY+LPA+VH+ QPRL +DDG
Sbjct: 182 KLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDG 238
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 115 bits (277), Expect = 2e-26
Identities = 51/96 (53%), Positives = 67/96 (69%)
Frame = +3
Query: 195 YVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPT 374
+V P+V S +E YR QH++T G ++PAP I FE G P ++E+L GFP+PT
Sbjct: 402 FVTSPDVPHL--SPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPT 459
Query: 375 PIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
PIQAQ WPIAL RD+V IA+TGSGKTL Y++PA +
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 114 bits (274), Expect = 4e-26
Identities = 56/120 (46%), Positives = 73/120 (60%)
Frame = +3
Query: 162 TVTLTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMK 341
++ P K+FY ++ T+ E YR + I V G DV P FE+ GF M
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 342 EILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
I KQ + PT IQ Q PI LSGRD++GIA+TGSGKT A++LP IVHI++QP L RD+G
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG 301
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 113 bits (273), Expect = 5e-26
Identities = 50/115 (43%), Positives = 73/115 (63%)
Frame = +3
Query: 177 PFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQ 356
PF+KNFY+ ++ R TQ + AYR + ++ V G+DVP P F+ + G + + K
Sbjct: 355 PFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKL 414
Query: 357 GFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
+ P PIQAQ PI +SGRD +G+A+TGSGKTL ++LP + HI +QP + DG
Sbjct: 415 NYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG 469
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 113 bits (271), Expect = 9e-26
Identities = 50/97 (51%), Positives = 66/97 (68%)
Frame = +3
Query: 198 VPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTP 377
VP P+ ++ EAY +H+ITV G VP P + FE GFP ++E+L GF PTP
Sbjct: 124 VPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTP 183
Query: 378 IQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
IQAQ WPIA+ GRD+V IA+TGSGKTL Y++P +H+
Sbjct: 184 IQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 113 bits (271), Expect = 9e-26
Identities = 50/97 (51%), Positives = 66/97 (68%)
Frame = +3
Query: 198 VPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTP 377
VP P+ ++ EAY +H+ITV G VP P + FE GFP ++E+L GF PTP
Sbjct: 124 VPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTP 183
Query: 378 IQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
IQAQ WPIA+ GRD+V IA+TGSGKTL Y++P +H+
Sbjct: 184 IQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 113 bits (271), Expect = 9e-26
Identities = 50/97 (51%), Positives = 66/97 (68%)
Frame = +3
Query: 198 VPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTP 377
VP P+ ++ EAY +H+ITV G VP P + FE GFP ++E+L GF PTP
Sbjct: 124 VPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTP 183
Query: 378 IQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
IQAQ WPIA+ GRD+V IA+TGSGKTL Y++P +H+
Sbjct: 184 IQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 112 bits (270), Expect = 1e-25
Identities = 49/115 (42%), Positives = 72/115 (62%)
Frame = +3
Query: 177 PFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQ 356
PF+KNFY+ ++ R TQ E+ YR + ++ V G+DVP P F+ + G + + K
Sbjct: 488 PFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKL 547
Query: 357 GFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
+ P PIQ Q PI +SGRD +G+A+TGSGKTL ++LP + HI +QP + DG
Sbjct: 548 NYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDG 602
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 94.7 bits (225), Expect = 3e-20
Identities = 44/106 (41%), Positives = 66/106 (62%)
Frame = +3
Query: 165 VTLTPFQKNFYVPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKE 344
+T T ++ P +V++ + +++ R Q ITV G D+P P F + FP ++
Sbjct: 52 ITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRM 111
Query: 345 ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
+ +G +PTPIQ QG P+ LSGRDM+GIA TGSGKTL ++LP I+
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 86.2 bits (204), Expect = 1e-17
Identities = 39/103 (37%), Positives = 63/103 (61%)
Frame = +3
Query: 201 PHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPI 380
P ++++ + + + R Q I V G D+P P F++ FP + + ++G PTPI
Sbjct: 113 PPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPI 172
Query: 381 QAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLL 509
Q QG P+ L+GRDM+GIA TGSGKTL ++LP I+ + + ++
Sbjct: 173 QVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMM 215
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/102 (32%), Positives = 57/102 (55%)
Frame = +3
Query: 213 VQRRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQG 392
++ T+ + +R I+ KG +P P +EE +K + + G+ P+PIQ
Sbjct: 284 LEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAA 343
Query: 393 WPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDD 518
P+ L RD++GIA+TGSGKT A++LP + +I P + ++
Sbjct: 344 IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEEN 385
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 74.5 bits (175), Expect = 4e-14
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Frame = +3
Query: 186 KNFYVPHPNVQRRTQSEIEAY-RSQHQITVKGRDVPAPSIFFEE----GGFPDYAMKEIL 350
KN V +P + Q E +A R Q+ I V G ++P P F E G Y ++ +
Sbjct: 98 KNEIVENPKKELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLA 157
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
+ GF PTPIQ Q PI LSGR+ A TGSGKT A+I P ++ +
Sbjct: 158 ELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKL 203
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 69.7 bits (163), Expect = 1e-12
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +3
Query: 198 VPHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIF--FEEGGFPDYAMKEILKQGFPNP 371
VP ++ E E+ + + +T KG + + F E P+ + + K F P
Sbjct: 80 VPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVL-DCCKT-FEKP 137
Query: 372 TPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQ 497
+PIQ+ WP L GRD++GIA+TGSGKTLA+ +PAI+H++ +
Sbjct: 138 SPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKK 179
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 68.5 bits (160), Expect = 3e-12
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +3
Query: 345 ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
+ GF P+PIQAQ WPIA+ RD+V IA+TGSGKTL Y++P +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 240 EAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKE 344
EAY +H+ITV G VP P + FE G P+ ++E
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPNELLRE 175
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 64.5 bits (150), Expect = 4e-11
Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Frame = +3
Query: 132 GGNLRKIHWDTVT--LTPFQKNFYVPHP--NVQRRTQSEIEAYRSQHQITVKGRDVPAPS 299
G N R WD + PF+ + P P Q T +AY I G +VP P
Sbjct: 100 GWNNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDI-PIETSGDNVPPPV 158
Query: 300 IFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F E + I + + PTP+Q PI L GRD++ AQTGSGKT A+ P I
Sbjct: 159 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
Query: 480 VHIINQPRLLRDDG 521
I+ + R G
Sbjct: 219 SGIMKDQHVQRPRG 232
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 64.1 bits (149), Expect = 5e-11
Identities = 45/133 (33%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = +3
Query: 132 GGNLRKIHWDT--VTLTPFQKNFYV-PHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSI 302
G N R WD PF + P N Q T EAY I G +VP P
Sbjct: 88 GWNARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVN 146
Query: 303 FFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
F E + I + + PTP+Q PI +GRD++ AQTGSGKT A+ P I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 483 HIINQPRLLRDDG 521
I+ + R G
Sbjct: 207 GIMKDQHIERPRG 219
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 61.7 bits (143), Expect = 3e-10
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +3
Query: 234 EIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSG 413
E+E R+ + + ++ AP F EE G ++ + K+G PT IQ P L G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAPKSF-EELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 414 RDMVGIAQTGSGKTLAYILPAI 479
+D+V A+TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 60.5 bits (140), Expect = 7e-10
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +3
Query: 192 FYVPHPNVQRRTQSEIEAYRSQHQITVKGRD--VPAPSIFFEEGGFPDYAMKEILKQGFP 365
FYV P + + + R + I V+G+ VP P + F G P + + G+
Sbjct: 75 FYVRDPG---SSSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYD 131
Query: 366 NPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
PTPIQ Q P AL+G+ ++ A TGSGKT ++++P I
Sbjct: 132 FPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
FE G ++A++ + G PTP+Q P L+GRD++G+AQTGSGKT A+ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 486 IINQP 500
+ P
Sbjct: 120 LAEDP 124
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.8 bits (136), Expect = 2e-09
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = +3
Query: 132 GGNLRKIHWDTVT--LTPFQKNFYV-PHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSI 302
G N R WD + PF + + P Q T +AY + G DVP P
Sbjct: 93 GWNNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVN 151
Query: 303 FFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
F + D I + + PTP+Q PI L+ RD++ AQTGSGKT A+ P I
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 483 HIINQPRLLRDDG 521
I+ + R G
Sbjct: 212 GIMKDQHVERPRG 224
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 58.8 bits (136), Expect = 2e-09
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = +3
Query: 132 GGNLRKIHWDTVT--LTPFQKNFYV-PHPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSI 302
G N R WD + PF + + P Q T +AY + G DVP P
Sbjct: 93 GWNNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVN 151
Query: 303 FFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
F + D I + + PTP+Q PI L+ RD++ AQTGSGKT A+ P I
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 483 HIINQPRLLRDDG 521
I+ + R G
Sbjct: 212 GIMKDQHVERPRG 224
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.0 bits (134), Expect = 4e-09
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F E G + +K + G+ NP+ IQA+ P AL G+D++G+AQTGSGKT A+ +P +
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
FEE G PD + + ++GF PT +Q+ P + G D V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 486 I 488
I
Sbjct: 172 I 172
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 56.8 bits (131), Expect = 8e-09
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +3
Query: 219 RRTQSEIEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQ--GFPNPTPIQAQG 392
+R Q + + + K + S F G D + + LK+ GF PT +QAQ
Sbjct: 2 KRAQQSARETKQEAKDASKAKSGLFASCSFSSLGL-DTKLSDQLKERMGFEAPTLVQAQA 60
Query: 393 WPIALSGRDMVGIAQTGSGKTLAYILPAIVHII-NQPRLLRDDG 521
P+ LSGRD++ A TG+GKT+AY+ P I H+ + P++ R G
Sbjct: 61 IPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHG 104
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
FE D K I + GF T IQA+ P + G D++G A+TGSGKTLA+++PA+
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 56.0 bits (129), Expect = 1e-08
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +3
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSG 449
VK D F++ ++K I GF T +Q PI L G+D++ A+TG+G
Sbjct: 372 VKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTG 431
Query: 450 KTLAYILPAIVHIINQPRLLRD 515
KT+A++LPAI +I P RD
Sbjct: 432 KTVAFLLPAIEAVIKSPPASRD 453
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 54.8 bits (126), Expect = 3e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3
Query: 357 GFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPR 503
G+ PTPIQA P+AL+GRD+ A TGSGKT A+ LP + ++ +P+
Sbjct: 186 GYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPK 234
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
FE I K+G+ PTPIQ + P+ LSG D+V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPML 87
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 53.6 bits (123), Expect = 8e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +3
Query: 321 FPDYAMKE-----ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F DY +K I ++GF P+PIQ + PIAL+GRD++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 486 I 488
I
Sbjct: 193 I 193
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 53.6 bits (123), Expect = 8e-08
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +3
Query: 321 FPDYAMKE-----ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F DY +K I ++GF P+PIQ + PIAL+GRD++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 486 I 488
I
Sbjct: 193 I 193
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F++ +K I GF T +Q P+ L G+D++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 486 IINQPRLLRDD 518
+I P RD+
Sbjct: 142 VIKAPPASRDN 152
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.2 bits (117), Expect = 4e-07
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = +3
Query: 312 EGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHII 491
+G P++ + + + GF PT IQ + P +GRD + AQTGSGKTL Y+L I +I
Sbjct: 80 QGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLL-LIFSLI 138
Query: 492 NQPR 503
N R
Sbjct: 139 NPQR 142
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 50.8 bits (116), Expect = 5e-07
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +3
Query: 336 MKEILK-QGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQP 500
++E LK G PIQA + + L G D+VG A+TG GKTLA++LP + ++N P
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
+K I ++GF P+PIQ + PIAL+G D++ A+ G+GKT A+ +P + I
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 50.4 bits (115), Expect = 7e-07
Identities = 22/51 (43%), Positives = 35/51 (68%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHI 488
+K I ++GF P+PIQ + PIAL+G D++ A+ G+GKT A+ +P + I
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 50.0 bits (114), Expect = 9e-07
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Frame = +3
Query: 321 FPDYAMKE-----ILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F DY +K I ++GF P+PIQ + PIAL+G D++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 486 I 488
I
Sbjct: 216 I 216
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +3
Query: 333 AMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQP 500
++K I G+ T +Q PI L G+D++ A+TG+GKT+A++LP+I ++ P
Sbjct: 65 SLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 120
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +3
Query: 237 IEAYRSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGR 416
+E + I + G+ + ++ F+ + I + GF T IQA L G+
Sbjct: 69 MEDGEDEKNIVIVGKGIMT-NVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 417 DMVGIAQTGSGKTLAYILPAI 479
D++G A+TGSGKTLA+++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +3
Query: 372 TPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQPRLLRDDG 521
T +Q+ P AL GRD++G A+TGSGKTLA+++P I+ +++ R +DG
Sbjct: 95 TDVQSAAIPHALCGRDILGAARTGSGKTLAFVIP-ILEKLHRERWSPEDG 143
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 336 MKEILKQGFPNPTPIQAQGWPIAL-SGRDMVGIAQTGSGKTLAYILPAIVHIINQ 497
MK I + F PT IQ + +A G+D++G A+TGSGKTLA+ LP + ++++
Sbjct: 202 MKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDE 256
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F E G + MK + +Q F P IQA + + G+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/69 (37%), Positives = 36/69 (52%)
Frame = +3
Query: 285 VPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY 464
V + E G +K + +G PIQ A+ GRDM+G A+TG+GKTLA+
Sbjct: 99 VGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAF 158
Query: 465 ILPAIVHII 491
+P I II
Sbjct: 159 GIPIIDKII 167
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 243 AYRSQHQITVKGRDV--PAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGR 416
A ++ ++ KG D ++ ++ G D + GF P+ QA P LSG+
Sbjct: 59 ASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGK 118
Query: 417 DMVGIAQTGSGKTLAYILPAIVHIIN 494
D++ A+TGSGKT Y+ P I + N
Sbjct: 119 DVIVAAETGSGKTHGYLAPIIDQLTN 144
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
+ GF TP+QA+ P S +D+V A TGSGKTLA++LP I
Sbjct: 33 RSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3
Query: 351 KQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
+ GF TP+QA+ P S +D+V A TGSGKTLA++LP I
Sbjct: 34 RSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 44.4 bits (100), Expect = 5e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +3
Query: 318 GFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHII 491
G +K + +G PIQ A+ GRDM+G A+TG+GKTLA+ +P I II
Sbjct: 122 GISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
F+E G + M + + PT IQ G P + + +V + TGSGKTLAY+LP +
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMK-EILK----QGFPNPTPIQAQGWPIALSGRDMVGIA 434
V G V + GF D+ +K E+L+ GF +P+ +Q + P A+ G D++ A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 435 QTGSGKTLAYILPAIVHIINQP 500
++G GKT ++L + I P
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP 112
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMK-EILK----QGFPNPTPIQAQGWPIALSGRDMVGIA 434
V G V + GF D+ +K E+L+ GF +P+ +Q + P A+ G D++ A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 435 QTGSGKTLAYILPAIVHIINQP 500
++G GKT ++L + I P
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP 112
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F++ G D ++ + G+ P+ IQ + L GRD++ AQ+G+GKT + I ++
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT-SMIAISVCQ 82
Query: 486 IIN 494
I+N
Sbjct: 83 IVN 85
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 324 PDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHIINQ 497
P + + K+G + PIQ AL GRD++ A+TG+GKTLA+ +P I + +
Sbjct: 110 PQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 342 EILKQG-FPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
E L Q F TP+QA P+ S +D+ A TGSGKTLA+++P +
Sbjct: 29 EALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 294 PSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKT 455
P F + G + ++ + + GF P+ IQ + L GRD++ AQ+G+GKT
Sbjct: 33 PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKT 86
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Frame = +3
Query: 204 HPNVQRRTQSEIEAYRSQHQITVKGRDVPAPSIF----FEEGGFPDYAMKEILKQGFPNP 371
+P + T E + R ++ + P SI+ F+E +K + G
Sbjct: 292 YPPLDINTVREDLSKRKSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKM 351
Query: 372 TPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHII 491
T +Q L G+D + A+TG+GK++A++LPAI ++
Sbjct: 352 TRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVL 391
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 485
F+E +K + G T +Q L G+D + A+TG+GK++A++LPAI
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 486 II 491
++
Sbjct: 437 VL 438
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 35.1 bits (77), Expect = 0.029
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY 464
F+ G + ++ I GF P+ IQ +G G D++ AQ+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 35.1 bits (77), Expect = 0.029
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 387 QGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
Q P AL+G+ ++ A TGSGKT ++++P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 35.1 bits (77), Expect = 0.029
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 306 FEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY 464
F+ G + ++ I GF P+ IQ +G G D++ AQ+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to
Homeobox protein FWA (SP:Q9FVI6) [Arabidopsis thaliana];
contains Pfam profiles PF01852: START domain and
PF00046: Homeobox domain; identical to cDNA
homeodomain-containing transcription factor FWA
(FWA)GI:13506819
Length = 686
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 120 NDQPGGNLRKIHWDTVTLTPFQKNFYV--PHPNVQRR 224
NDQ GG +R+ H T T +NFY+ PHP ++R
Sbjct: 34 NDQDGGRMRRTHRRTAYQTQELENFYMENPHPTEEQR 70
>At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplast
(RPOPT) identical to SP|O24600 DNA-directed RNA
polymerase, chloroplast precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 1035
Score = 34.3 bits (75), Expect = 0.050
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = -1
Query: 407 ESYWPALC----LNRSGVRETLF*NLFHSIVRETTLFKKYARGRHVSTFHRYLMLATIGL 240
+SYW C +NR +RE F L+++ + E T+FK Y + T H++++ T
Sbjct: 926 DSYWTHACDVDTMNRI-LREK-FVELYNTPILEDTIFKSYVKYFPAFTDHKFILTITRNP 983
Query: 239 NFALSSTLNIRMRDIEIFLE 180
L S LNI + D + L+
Sbjct: 984 ETKL-SLLNININDDALLLQ 1002
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 33.5 bits (73), Expect = 0.088
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 339 KEILKQGFPNPTPIQAQGW--PIALSG--RDMVGIAQTGSGKTLAYILPAIVHIINQP-R 503
K + G + P+Q W I G RD+ + TGSGKTL+Y LP + + ++P R
Sbjct: 34 KALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVR 93
Query: 504 LLR 512
LR
Sbjct: 94 CLR 96
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 31.9 bits (69), Expect = 0.27
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 324 PDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTGSGKTLAY 464
PD ++ I GF P+ IQ +G G D++ AQ+G+GKT +
Sbjct: 50 PDL-LRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 EILKQGFPNPTPIQAQGWPIALSGRDMVGI-AQTGSGKTL 458
EIL Q F + P+Q Q + + + D V + A TGSGKT+
Sbjct: 1342 EILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTI 1381
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIV 482
+SG D+ + TG GK+L Y LPA++
Sbjct: 466 MSGSDVFVLMPTGGGKSLTYQLPALI 491
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 264 ITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTPIQAQGWPIALSGRDMVGIAQTG 443
+ + +D PS + E D ++ G P+Q Q ++ +D + TG
Sbjct: 173 VQISNKDHETPS-YEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTG 231
Query: 444 SGKTLAYILPA 476
GK+L Y LPA
Sbjct: 232 GGKSLCYQLPA 242
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 405 LSGRDMVGIAQTGSGKTLAYILPAIV 482
++GRD++ I G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
>At2g23120.1 68415.m02758 expressed protein
Length = 83
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 270 VKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPNPTP 377
VK D+P S + G DY +K +G PTP
Sbjct: 21 VKDNDLPTDSPYMATGTLEDYKLKAYGAEGHQEPTP 56
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 381 QAQGWPIALSGRDMVGIAQTGSGKTLAYILPAI 479
Q + +SGRD + TG GK++ Y +PA+
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPAL 73
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 381 QAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIV 482
Q Q + L G + + TG+GK+L Y +PA++
Sbjct: 274 QLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g58890.1 68418.m07378 MADS-box family protein various predicted
proteins, Oryza sativa and Arabidopsis thaliana
Length = 294
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 249 RSQHQITVKGRDVPAPSIFFEEGGFPDYAMKEILKQGFPN 368
RS ++ + D P P ++ P Y ++ QGFPN
Sbjct: 152 RSMFRVNHQAMDTPFPQNLMDQQFMPQYFHEQPQFQGFPN 191
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 414 RDMVGIAQTGSGKTLAYILPAIV 482
+D + +A TGSGK+L + +PA++
Sbjct: 184 KDCLVLAATGSGKSLCFQIPALL 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,361
Number of Sequences: 28952
Number of extensions: 251401
Number of successful extensions: 682
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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