Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    28   0.058
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    28   0.058
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   2.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 5   VMAAPPPNYIQITIVSYKSQPAVPTRGP 88
           VM +PP N + +T+  Y+  P++   GP
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGP 162


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 5   VMAAPPPNYIQITIVSYKSQPAVPTRGP 88
           VM +PP N + +T+  Y+  P++   GP
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGP 162


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 159 QYQSIILHMIYFP*SKTNSERAVPGPRV 76
           Q ++ I+H+I    S  + +R+ P PRV
Sbjct: 397 QVEAAIVHLIANLPSPGSDQRSTPSPRV 424


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 YNTLVLHFNCCLENV 186
           Y  +++ F+CCLE V
Sbjct: 243 YQIILVIFDCCLETV 257


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 163 NAIPKYYITYDILSII 116
           N +P++YI Y I  II
Sbjct: 35  NEVPRWYICYTIGVII 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,352
Number of Sequences: 336
Number of extensions: 2080
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)