Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    29   3.0  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     28   5.2  
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817...    27   9.1  

>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 56  KSQPAVPTRGPGTALSLFVFDYGKYIICNI-ILWYCILTVV 175
           +S P V    PG +  LFVFD  K+ +C + +L YC++  V
Sbjct: 864 RSTPFVDGACPGISCPLFVFD--KFWVCFVEVLSYCMICPV 902


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 285 LL*LLTSIVIEIFVYFNLFFLISQSISKMKCSAPPPGRSVVVTLC*VKVMHLRKYLLSAQ 464
           +L +LT I+IE   +   F     +I +M CS   P R  +  +  V V+++R  LLS+ 
Sbjct: 444 MLLVLTVILIEAHDFLTSFVFSDWNIVRMLCSYDRPSRRWLQKIYSV-VIYIRSCLLSSS 502

Query: 465 R 467
           +
Sbjct: 503 K 503


>06_03_0734 -
           23980576-23980671,23980799-23981338,23981493-23981714,
           23981791-23982144,23982460-23982546
          Length = 432

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 302 RK*LKQFKCEYSKCCNTKEAESP 234
           R+ L++ KC  + CC T E  SP
Sbjct: 149 RRQLQKLKCSENGCCTTDEPRSP 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,476
Number of Sequences: 37544
Number of extensions: 224698
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)