Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36777| Best HMM Match : VWA (HMM E-Value=0)                         28   5.4  
SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)        27   7.1  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            27   9.4  

>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1303

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 348 ISQSISKMKCSAPPPGRSVVVTLC*VKV 431
           + Q+I    C+APPP ++  V +C  KV
Sbjct: 372 VIQTIKDKACNAPPPTQTPTVKVCKAKV 399



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 348 ISQSISKMKCSAPPPGRSVVVTLC*VKV 431
           + Q+I    C+APPP ++  V +C  KV
Sbjct: 569 VIQTIKDKACNAPPPTQTPTVKVCKAKV 596


>SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)
          Length = 416

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 372 KCSAPPPGRSVVVTLC*VKVMHLRKYLLSAQRMCARTHFHRRRS 503
           KC APP G++  +T C + +  +     S QR   + + +RR+S
Sbjct: 349 KCIAPPKGQNAALTSCNL-IGQMNNISSSTQRTPLKNNDNRRQS 391


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 287  QFKCEYSKCCNTKEAE 240
            +F+C+Y+K CN K+ E
Sbjct: 1571 EFECDYTKACNPKKQE 1586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,443
Number of Sequences: 59808
Number of extensions: 244311
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)