Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   3.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.8  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    25   9.0  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 69  PIMSQAHYKEVQSCLKKKLHIR 134
           P++S    KEV  CLK K H++
Sbjct: 497 PMLSYPWSKEVLGCLKHKFHLK 518


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   RLKKPHE*LSPPMPHYATFVRPIMSQAHYKEV 101
           RLK PHE +       +TFV    S + Y++V
Sbjct: 207 RLKLPHEQIEETFTSLSTFVTNNWSPSEYEDV 238


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 102 QSCLKKKLHIRCLKVPQKLSRGQGVKVLDSCPEEAGLLASSNPFILQNVLRSH 260
           Q  +  K  +   +VP+KLS     K  +   +  G  A ++P + Q+ L+++
Sbjct: 304 QQNVSDKKQVTVKEVPKKLSVKNAAKTTNRDEDSKGKKAKASPKVSQSSLKAN 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,825
Number of Sequences: 5004
Number of extensions: 38484
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)