Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0558 - 18504639-18505718                                         32   0.32 
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533...    29   1.7  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    28   5.2  
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    27   6.9  
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742...    27   9.1  

>09_04_0558 - 18504639-18505718
          Length = 359

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +3

Query: 21  HE*LSPPMPHYATFVRPIMSQAHYKEVQSCLKKKLHIRCLKVPQKLSRGQGVKVLDSCPE 200
           H  L PP  H+  +VR   +  +  E ++ L+ KL    L+ P+++     V      PE
Sbjct: 208 HFLLLPPTEHHRLYVRDYPAAHYAAEDEAELRLKLE---LEEPERIVPWSSVDPYPPSPE 264

Query: 201 EAGLLASSNPFILQ 242
           EA   ASS P   +
Sbjct: 265 EAAAQASSFPLYFE 278


>05_01_0594 -
           5337804-5337976,5338282-5338436,5338591-5338745,
           5338864-5338992,5339096-5339189,5339293-5339366,
           5339716-5339851,5341546-5341562
          Length = 310

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 217 LPAIPSFYKTYCVHTTSLCSLKSLDEPF 300
           LP I   Y T C   T LC L+ L+ PF
Sbjct: 11  LPPISKAYGTLCFFATVLCQLQILNPPF 38


>01_07_0112 - 41149461-41151674,41151688-41153265,41154344-41155507,
            41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 171  GVKVLDSCPEEAGLLASSNPFILQNVLRSHYKP 269
            G K L++ PE  GLL S   F++ N  +  Y P
Sbjct: 1449 GCKGLETLPEGLGLLISLKKFVISNCPKLTYLP 1481


>02_03_0272 -
           17146578-17146691,17146806-17146926,17147260-17147365,
           17147469-17147551,17147688-17147815,17147897-17147983,
           17148064-17148174,17148502-17148669,17148753-17148837,
           17148921-17149037,17149127-17149203,17149299-17149370,
           17150538-17150634,17150750-17150952,17151115-17151217,
           17151324-17151391,17151461-17151514,17151595-17151704,
           17151982-17152060,17152171-17152233,17153410-17153529,
           17153913-17153969,17154071-17154187,17156426-17156476,
           17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 53  CYFCEAYNVSGTL*RSPILPQKKTSYTLPE 142
           CYF   Y         P+ P K++ Y LPE
Sbjct: 762 CYFVNDYKQKNRDCLDPVCPHKRSDYGLPE 791


>01_06_1788 -
           39873900-39873986,39874009-39874137,39874180-39874246,
           39874874-39874909,39875146-39875292,39875772-39875899,
           39876349-39876435,39876523-39876633,39877433-39877600,
           39877665-39877749,39877826-39877942,39878051-39878127,
           39879981-39880077,39880175-39880377,39880519-39880645,
           39880687-39880754,39880855-39880908,39880990-39881108,
           39881651-39881729,39881803-39881865,39882113-39882232,
           39882718-39882774,39882872-39882988,39883122-39883172,
           39883262-39883360,39883438-39883583,39883740-39883887
          Length = 928

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 53  CYFCEAYNVSGTL*RSPILPQKKTSYTLPE 142
           CYF   Y         P+ P K+  Y LPE
Sbjct: 723 CYFVNDYKQKNRDVLGPVCPHKRADYGLPE 752


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,800
Number of Sequences: 37544
Number of extensions: 222243
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)