Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_16909| Best HMM Match : Peptidase_S8 (HMM E-Value=8.7)              28   5.4  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +2

Query: 14  KAP*VTVTSYATLCYFCEAYNVSGTL*RSPILPQKKTSYTLP---ESPSKIIPRAGC*SI 184
           + P V    ++ L  +CE Y  + TL +SP +  + TS  +P    SP       GC   
Sbjct: 64  RTPAVQKLCFSALMAYCELYKKAATLDKSPTIDVRGTSIKMPSMRRSPMSGPYPGGCRGC 123

Query: 185 GLL-P*RSWPPGFQQSLHSTKRIAFT 259
            L  P       F    H T   +FT
Sbjct: 124 ELSPPFNRRRSNFSSQKHKTDHSSFT 149


>SB_16909| Best HMM Match : Peptidase_S8 (HMM E-Value=8.7)
          Length = 301

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 115 KKNFIYAA*KSLKNYPAGRVLK-YWTLALKKLASWLPAIPSFYKTYCVHTTSLCSL 279
           K+++ Y    SL N   G   + Y  +   + A +L  + SFY  Y  +TTSL SL
Sbjct: 177 KEDYNYEKLDSLYNEIKGNDNRTYKQMLASRDADFLALVYSFYSNYANNTTSLTSL 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,140,447
Number of Sequences: 59808
Number of extensions: 262316
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)