Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.47 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   3.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +3

Query: 51  YATFVRPIMSQAHYKEVQSCLKKKLHIRCLKVPQKLSR--GQGVKV---LDSCPEEAGLL 215
           Y TF RP      + E+       L +  L+ PQ + +   +G+++   +  CPE   +L
Sbjct: 332 YFTFTRPCGITLTFHEILK-RANTLFVLTLQRPQDVDKYPAEGLEMKGQMVHCPESDSIL 390

Query: 216 ASSNPFI 236
             S+PF+
Sbjct: 391 FVSSPFL 397


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 505 YKSATYEANCLKTVSIFYVSI 443
           + SAT+  +  K VS+FY ++
Sbjct: 140 HPSATFSLDLNKVVSVFYTAV 160


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 499 SATYEANCLKTVSIFYVSI 443
           SAT+  +  K VS+FY ++
Sbjct: 141 SATFSLDLNKVVSVFYTAV 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,805
Number of Sequences: 438
Number of extensions: 2299
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)