Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   1.3  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   1.7  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.7  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.0  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 208 VGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHEKNCNE 47
           VG   W ++         A+++  V +VSA  ++G  G  V +   N E N  +
Sbjct: 636 VGISLWTNLSMFKHVSTKALRLDDVVEVSAPSVSGEKGISVVEAALNVESNAED 689


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 493 GVRYANSDWVWHRSVDGNRVRSWNGY 416
           G+R+A+   +W      +++RSWN Y
Sbjct: 91  GIRFADLRELWEYEPKHDKIRSWNTY 116


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 109 NGFTGFRVAQNRGNHEKNCNESLHFSLY 26
           N +   R+  NR N   NC   L FSLY
Sbjct: 32  NVYFSLRILLNRQNEGNNCKYKLVFSLY 59


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 223 WAG*SVGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHE 62
           W G S+GA S  +    +   P  ++ +IVT    A+  G        N G H+
Sbjct: 119 WTGLSIGALSVLAPGFQSEVAPADLRGTIVTTYQLAVTGGIF-IAACINMGTHK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,140
Number of Sequences: 5004
Number of extensions: 18966
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)