Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311B01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0459 + 17420156-17420976,17422291-17424199                       28   4.0  
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834...    28   4.0  
03_01_0377 + 2940333-2940418,2940512-2940658,2940741-2940809,294...    28   5.2  
12_02_0266 - 16582912-16584918,16585041-16585229                       27   9.1  

>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 4   SEIVTTTNIKKNEGFHCSSFRGCLGSGRP 90
           S+I+TTT I       CSSFRG L + RP
Sbjct: 302 SKIITTTRISDVARSCCSSFRGHLYNIRP 330


>03_05_0222 +
           22082863-22082938,22083261-22083333,22083451-22083496,
           22083639-22083753,22083847-22083926,22084022-22084621,
           22084718-22084822,22084916-22085248
          Length = 475

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 164 STRGRKDQHSDPGVRCASEWFYWVQGRPEPRQPRKE 57
           ST G  DQ +   +R A      V+G+PEP +P+K+
Sbjct: 415 STGGTVDQKTIDSIRQAIGQNIQVKGQPEPSEPQKK 450


>03_01_0377 +
           2940333-2940418,2940512-2940658,2940741-2940809,
           2940958-2941123,2941208-2941436,2941528-2942054
          Length = 407

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 65  VVASVLGDPEPSKTIQKRSGHLGHYADLYGHGLSSGIAVHAGPAF 199
           VVA  LG  +PS + +  +  L HY D  GHGL     +  G  F
Sbjct: 167 VVAKWLGLTKPSSSGRLATRGLAHYPD--GHGLDPRFKMFVGHGF 209


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 4   SEIVTTTNIKKNEGFHCSSFRGCLGSGRP 90
           S I+TTT  K      CSSFRG +   +P
Sbjct: 97  SRIITTTRTKDVANACCSSFRGIVYKMKP 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,328,667
Number of Sequences: 37544
Number of extensions: 155616
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)