Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A12f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    77   2e-13
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    40   0.046
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.3  
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    33   4.0  
UniRef50_A6QT16 Cluster: Predicted protein; n=1; Ajellomyces cap...    33   4.0  
UniRef50_Q6CVG4 Cluster: Similar to sp|P38065 Saccharomyces cere...    33   5.2  
UniRef50_Q5Z9U6 Cluster: Putative uncharacterized protein P0528B...    32   9.2  
UniRef50_Q8T148 Cluster: Similar to Dictyostelium discoideum (Sl...    32   9.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 77.0 bits (181), Expect = 2e-13
 Identities = 43/83 (51%), Positives = 50/83 (60%)
 Frame = +1

Query: 190 PVDRMVNSRRRPKHVNTDPPDPLTVLLGTTSTGHRPRRTRRFTSKLTNRHSPLFFSPDLL 369
           P D    SRR P HV +DP D L+VLL  +STG+ P R RR T+  T    P+ F     
Sbjct: 26  PRDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGYCPCRVRRATNPKT---QPMKFLAGSS 82

Query: 370 SESRFRSGGRFCEARLLLGFVVA 438
             SRFRS GRFCEA LLLG V+A
Sbjct: 83  QSSRFRSDGRFCEALLLLGLVLA 105


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 39.5 bits (88), Expect = 0.046
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +1

Query: 214 RRRPKHVNTDPPDPLTVLLGTTSTGHRPR 300
           RRRP+HV TDP DP+T+ L T S+  R R
Sbjct: 913 RRRPRHVLTDPSDPITLALDTFSSNTRSR 941


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +1

Query: 301 RTRRFTSKLTNRHSPLFFSPDLLSESRFRSGGRF 402
           +T   +++  +R  PL FSPDLLS SRFR+G  +
Sbjct: 382 KTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 PVDRMVNSRRRPKHVNTDPPDPLTVL 267
           PV      RRRP+H+  DPPD +T +
Sbjct: 114 PVPNAARPRRRPRHIFIDPPDEITAV 139


>UniRef50_A6QT16 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 1218

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 223 PKHVNTDPPDPLTVLLGTTSTGHRPRRTRRFTSKLT-NRHSPLFFSP 360
           P H+N+DPP P+ +    T+ G R  R+R+     T N    L  SP
Sbjct: 618 PSHLNSDPPIPIPIKTYNTNVGSRVTRSRKRMEPTTINSDHELSTSP 664


>UniRef50_Q6CVG4 Cluster: Similar to sp|P38065 Saccharomyces
           cerevisiae YBL037w APL3 AP-2 complex subunit; n=1;
           Kluyveromyces lactis|Rep: Similar to sp|P38065
           Saccharomyces cerevisiae YBL037w APL3 AP-2 complex
           subunit - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 952

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +1

Query: 223 PKHVNTDPPDPLTVLLGTTSTGHRPRRTRRFTSKLTNRHSPLFFSPDLLSESRFRSGGRF 402
           P   + +PP  L VL    S          +T ++T R         LLS S+F+ GG++
Sbjct: 760 PLRADNNPPYVLQVLQSPDSKLAPSNGRTSYTFEITTRFPFPQEHASLLS-SQFKCGGQY 818

Query: 403 CEARLLLGFVV 435
           C  RL +G+ +
Sbjct: 819 CSHRLKIGYTI 829


>UniRef50_Q5Z9U6 Cluster: Putative uncharacterized protein
           P0528B02.37; n=3; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0528B02.37 - Oryza sativa subsp. japonica (Rice)
          Length = 259

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 196 DRMVNSRRRPKHVNTDPPDPLTVLL-GTTSTGHRPRRTRRFTSKLTNRHSPLFFSPDLLS 372
           D   + RRRP+     PP P   LL G  + G   RR+RR +   T    PL    D   
Sbjct: 25  DAAGHGRRRPRRSFPPPPPPPAPLLPGADAAGRGRRRSRRSSPAPTPPPPPLLPGADAAG 84

Query: 373 ESRFR 387
             R R
Sbjct: 85  HGRRR 89


>UniRef50_Q8T148 Cluster: Similar to Dictyostelium discoideum (Slime
           mold). Homeobox-containing protein; n=2; Dictyostelium
           discoideum|Rep: Similar to Dictyostelium discoideum
           (Slime mold). Homeobox-containing protein -
           Dictyostelium discoideum (Slime mold)
          Length = 1108

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 163 SMDCTTHFKHLPNNTKNRDRIMDFYI*NSLNNFN 62
           S + + HF+H  NN  N D ++D+   N+ NN N
Sbjct: 802 SSNGSDHFQHNNNNNNNNDHLVDYQNNNNNNNIN 835


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,817,593
Number of Sequences: 1657284
Number of extensions: 10087868
Number of successful extensions: 22976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22967
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)