Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    30   0.24 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   3.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   6.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   6.8  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   9.0  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   9.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   9.0  

>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 257 NGSGGSVLTCLGRRRLFTIRSTGSDMNILF--QINGLYYSF*TPAKQHEKSGPNYGFLY 87
           N + G+ L  L      TI +   D +++F     G+  +  T  K +EK+G +YGF Y
Sbjct: 38  NFTHGADLCALAEAYAETIIAMNVDFDVIFGPAYKGISLAAITAVKLYEKTGKSYGFAY 96


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 98  HNSVPIFRVVWQVFKMSSTI 157
           H S P F ++W ++ MS  +
Sbjct: 417 HQSCPYFHIIWDLYSMSRLV 436


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 154  NPLIWNNIFISDPVDRMVNSRRRPKHVNTDPPDPLTVLLGT 276
            NPL+ NN      V+ +V+S+   KH        L  L+ +
Sbjct: 1059 NPLLTNNTLEPSSVEAIVSSKDSDKHAKESKGKSLAPLISS 1099


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 199 GLQDQI*IYCSKSMDCTTHFKHL 131
           G +DQ   Y SKS+D T+HF+ L
Sbjct: 393 GTKDQC--YISKSVDATSHFETL 413


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 271 GTTSTGHRPRR-TRRFTSKLTNRHSPLFFSPDLLSESRFRSGGRFCEARLLLGF 429
           G   T  R R  T+   + L NRH     + D++S+   +  G FC A  +L F
Sbjct: 768 GEFFTSKRGREVTKELVNSLVNRHLQSGGNIDMVSQLLRKKCGSFCSADDVLIF 821


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 208 NSRRRPKHVNTDPPDPLTVLLGTTSTGHRPRRTRR 312
           N+ R PK + T+P +P +    +     R  R+RR
Sbjct: 235 NTARSPKRMATEPIEPASSPAASNQAIRRSSRSRR 269


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 217 RRPKHVNTDPPDPLTVLLGTTSTGH 291
           R P  VN DP  P+  L G+ S  H
Sbjct: 135 RHPICVNLDPTQPMLALPGSISAFH 159


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 208 NSRRRPKHVNTDPPDPLT 261
           N RRR  H+N  P  P+T
Sbjct: 147 NRRRRSNHLNNPPEAPIT 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,738
Number of Sequences: 5004
Number of extensions: 42598
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)