Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0267 - 19570478-19571122                                         29   1.7  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   2.3  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    28   4.0  
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225...    28   4.0  
09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416     28   5.2  
04_04_0651 - 26952360-26952437,26952923-26952999,26954072-269543...    28   5.2  

>05_04_0267 - 19570478-19571122
          Length = 214

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +1

Query: 184 SDPVDRMVNSRRRPKHVNTDPPDPLTVLLGTTSTGHRPRRTRRFTSKLTNRHSPLFFSPD 363
           +DP  R      R +   T+   P +++    S    PRRTRR TS L  R+    F+  
Sbjct: 59  ADPRRRRPRRTSRYESFRTEKDHPRSLMHRNFSEATPPRRTRRVTSSLLVRNRNKVFTRR 118

Query: 364 LLSESRFRSGGRF 402
            +   + R    F
Sbjct: 119 FVGNMKERHDDAF 131


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 210 IYHSVYRIRYEYIVPNQWIVLLILNTCQTTRKI 112
           ++HS+ R R   +VP+Q I+  +L+TC  TR +
Sbjct: 157 LFHSMKRSR---VVPDQVIIATVLSTCAHTRNL 186


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 289 HRPRRTRRFTSKLTNRHSPLFFSPD--LLSESRFRSGGRFCEARLL 420
           H   R RR  S+ +N H PL  SPD  L +    +    F  ARLL
Sbjct: 308 HADNRLRRSPSRSSNFHHPLSPSPDNSLENLQHMQKENEFLTARLL 353


>02_05_0420 +
           28821717-28821854,28821944-28822210,28822299-28822568,
           28822656-28823246,28823336-28823479
          Length = 469

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 196 DRMVNSRRRPKHVNTDPPDPLTVLLGTTSTGH--RPRRTRRFTSKLTNRHSPLFFSPDLL 369
           ++++N+R R       PP+P  V    T++ H  +P + RR+  +   R      +PDL+
Sbjct: 91  EKLLNNRTRILAFRNKPPEPENVSAADTASTHQAKPAKQRRYIPQSAER---TLDAPDLV 147

Query: 370 SE 375
            +
Sbjct: 148 DD 149


>09_04_0341 + 16820890-16820993,16821082-16821269,16821412-16821416
          Length = 98

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 129 QTTRKIGTELWIFIFKTH-LITLMDLYKHKTIY 34
           ++T K+  E W+  +  + LITLM++  HK +Y
Sbjct: 2   ESTSKVDDEQWLVYWILYSLITLMEMALHKVLY 34


>04_04_0651 -
           26952360-26952437,26952923-26952999,26954072-26954300,
           26954926-26955537
          Length = 331

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 446 DDVATTNPSKSRASQNLPPDRKRDSLRRSGE 354
           D    ++PS  RAS N PP+ K  S+    E
Sbjct: 60  DGECVSDPSPGRASTNRPPEEKESSVEVDAE 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,280,132
Number of Sequences: 37544
Number of extensions: 273040
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)