Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         27   7.1  
SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)            27   7.1  
SB_35983| Best HMM Match : Ice_nucleation (HMM E-Value=0.42)           27   7.1  
SB_32989| Best HMM Match : Umbravirus_LDM (HMM E-Value=3.4)            27   9.4  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)          27   9.4  
SB_20004| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265  LLGTTSTGHRPRRTRRFTSKLTNRHSPLF-FSPDLLSESRFRSGGRFCEARL 417
            L G  +    PR T++   K   R SPL+   P L S+   R GGR   A +
Sbjct: 1209 LKGANTDPENPRETKKHAKKAL-RGSPLYRLDPFLDSDGILRVGGRLRRAEM 1259


>SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)
          Length = 240

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 476 LVGELTGLKPDDVATTNPSKSRASQNL 396
           L G +T LK DD+  T+PSK    Q L
Sbjct: 198 LGGRMTTLKGDDIIYTDPSKPANDQGL 224


>SB_35983| Best HMM Match : Ice_nucleation (HMM E-Value=0.42)
          Length = 216

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 244 PPDPLTVLLGTTSTGHRPRRTRRFTSKL 327
           P DP   L  T +T H  RRT R+T++L
Sbjct: 153 PHDPRHGLKRTDNTRHGSRRTARYTTRL 180


>SB_32989| Best HMM Match : Umbravirus_LDM (HMM E-Value=3.4)
          Length = 279

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265 LLGTTSTGHRPRRTRRFTSKLTNRHSPLF-FSPDLLSESRFRSGGRFCEARL 417
           L G  +    PR T++  +K   R SPL+   P L S+   R GGR   A +
Sbjct: 68  LKGANTDHENPRETKK-NAKKALRGSPLYRLDPILDSDGILRVGGRLRRAEM 118


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265  LLGTTSTGHRPRRTRRFTSKLTNRHSPLF-FSPDLLSESRFRSGGRFCEARL 417
            L G  +    PR T++  +K   R SPL+   P L S+   R GGR   A +
Sbjct: 1532 LKGANTDPENPRETKK-NAKKALRGSPLYRLDPFLDSDGILRVGGRLRRAEM 1582


>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
          Length = 1170

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265  LLGTTSTGHRPRRTRRFTSKLTNRHSPLF-FSPDLLSESRFRSGGRFCEARL 417
            L G  +    PR T++  +K   R SPL+   P L S+   R GGR   A +
Sbjct: 895  LKGANTDPENPRETKK-NAKKALRGSPLYRLDPFLDSDGILRVGGRLRRAEM 945


>SB_20004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265 LLGTTSTGHRPRRTRRFTSKLTNRHSPLF-FSPDLLSESRFRSGGRFCEARL 417
           L G  +    PR T++  +K   R SPL+   P L S+   R GGR   A +
Sbjct: 37  LKGANTDPENPRETKK-NAKKALRGSPLYRLDPFLDSDGILRVGGRLRRAEM 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,958
Number of Sequences: 59808
Number of extensions: 321735
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)