Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a prote...    27   6.2  

>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 211 SRRRPKHVNTDPPDPLTVLLGTTSTGHRPRRTRRFTS 321
           SR++  H  T PP P T  L T++T +    T   TS
Sbjct: 329 SRKQRCHTTTQPPSPTTESLPTSTTTYEMNTTSLETS 365


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 SVPIFRVVWQVFKMSSTIH*FGTIYSYL 187
           S+ +F  VW+    SS    F T+YSYL
Sbjct: 280 SLQVFLTVWETINRSSLEDGFPTMYSYL 307


>U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical
           protein K06B9.4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 234 DVFRATSTIYHSVYRIRYEYIVPNQWIVLLILNTCQTTRKIGT 106
           D+ R  S  YHS +R    +I  N+ ++ L L +C T  +I T
Sbjct: 208 DLSRMFSHAYHSSHRNSIRFIYFNKSMLGLFLKSCPTYTEITT 250


>AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a protein
           protein 31 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 156 IVLLILNTCQTTRKIGTELWIFIFKTHLITLMDLYKHKTIY 34
           +++L L  C+T +KI     + I +  LIT +D +K+  I+
Sbjct: 155 LLILPLFNCKTLKKISLRRILEIGRFELITYLDQWKNSKIF 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,137
Number of Sequences: 27780
Number of extensions: 235014
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)