Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    29   1.9  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    28   4.4  
At4g18550.1 68417.m02748 lipase class 3 family protein similar t...    27   7.7  

>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 337 VYWLIYS*SDGFG--EDGDRCLWYLTAPL 257
           +YWLI S   GFG  ++G   +WY ++PL
Sbjct: 250 IYWLIGSDHTGFGAKKNGQLEIWYSSSPL 278


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = +1

Query: 205 VNSRRRPKHVNTDPPDPLTVLLGTTSTGHRPRRTRRFTSKLT--NRH--------SPLFF 354
           V +RRR     + PPD    L  + S   R RR R F+ + +   R+        SP  F
Sbjct: 647 VPARRRSVRPRSPPPDRRRSLSRSASPNGRIRRGRGFSQRFSYARRYRTSPSPDRSPYRF 706

Query: 355 SPDLLSESRFRSGGRFCEAR 414
           S D     RFRS  RF  +R
Sbjct: 707 S-DRSDRDRFRSRRRFSPSR 725


>At4g18550.1 68417.m02748 lipase class 3 family protein similar to
           lipase [Dianthus caryophyllus] GI:4103627; contains Pfam
           profile PF01764: Lipase
          Length = 419

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 240 RIDVFRATSTIYHSVYRIRYEYIVPNQWIVL 148
           R+DV RA   +  SV  ++ E +VP +W VL
Sbjct: 361 RLDVERAIGLVNKSVDGLKDECMVPGKWRVL 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,474
Number of Sequences: 28952
Number of extensions: 220094
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)