Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A10f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    41   0.020
UniRef50_UPI0000499223 Cluster: hypothetical protein 12.t00015; ...    32   6.9  
UniRef50_A3UTI9 Cluster: ATPase domain protein; n=1; Vibrio sple...    32   9.2  
UniRef50_A2DNB5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 40.7 bits (91), Expect = 0.020
 Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -2

Query: 490 AGWWYLPVRTHKRSYH--QCLF 431
           A WWYLP RTHKRSYH  QC +
Sbjct: 569 AEWWYLPARTHKRSYHRYQCSY 590


>UniRef50_UPI0000499223 Cluster: hypothetical protein 12.t00015;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 12.t00015 - Entamoeba histolytica HM-1:IMSS
          Length = 1077

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -3

Query: 369 LRDQNAELIHSRNSEANDQILEVR*KVELHNDIFEKFCI 253
           L+ +N+E++H  N++  +  L    +  ++NDIF+K C+
Sbjct: 56  LQQKNSEILHCSNNQLMEFTLPFIDEFHINNDIFDKLCL 94


>UniRef50_A3UTI9 Cluster: ATPase domain protein; n=1; Vibrio
           splendidus 12B01|Rep: ATPase domain protein - Vibrio
           splendidus 12B01
          Length = 362

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 475 LPVRTHKRSYHQCLFLVFIITDCKFSYLHSYTDRVLKRPK 356
           +PVRT ++S      L+ ++TD K S+L S  +  L+ PK
Sbjct: 214 VPVRTDQQSVDSLQLLIDLLTDTKRSFLRSQENLSLRTPK 253


>UniRef50_A2DNB5 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 630

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -3

Query: 390 IATLIGCLRDQNAELIHSRNSEANDQILEVR*KVELHNDIFEKFCIHTSFERQDSHQFTK 211
           I T+    ++ N  L H +N E N     +     L N I ++ C+H SF + D HQF  
Sbjct: 238 IETIQNTCKNLNENLEH-KNQELNQMSDVIAINTTLENAI-QELCLHFSFIKFDGHQFDC 295

Query: 210 K 208
           K
Sbjct: 296 K 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,848,723
Number of Sequences: 1657284
Number of extensions: 8129398
Number of successful extensions: 22056
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22047
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)